Deep Learning Features for Face Age Estimation: Better Than Human? - Krzysztof Kotowski; Katarzyna Stapor (BDAS, 2018)

Detection and Segmentation of Brain Tumors from MRI Using U-Nets. - Krzysztof Kotowski; Jakub Nalepa; Wojciech Dudzik (BrainLes@MICCAI (2), 2019)

Segmenting Brain Tumors from MRI Using Cascaded 3D U-Nets. - Krzysztof Kotowski; Szymon Adamski; Wojciech Malara; Bartosz Machura; Lukasz Zarudzki; Jakub Nalepa (BrainLes@MICCAI (2), 2020)

Fully-automated deep learning-powered system for DCE-MRI analysis of brain tumors. - Jakub Nalepa; Pablo Ribalta Lorenzo; Michal Marcinkiewicz; Barbara Bobek-Billewicz; Pawel Wawrzyniak; Maksym Walczak; Michal Kawulok; Wojciech Dudzik; Krzysztof Kotowski; Izabela Burda; Bartosz Machura; Grzegorz Mrukwa; et al. (Artif. Intell. Medicine, 2020)

Coupling nnU-Nets with Expert Knowledge for Accurate Brain Tumor Segmentation from MRI. - Krzysztof Kotowski; Szymon Adamski; Bartosz Machura; Lukasz Zarudzki; Jakub Nalepa (BrainLes@MICCAI (2), 2021)

ProteinUnet - An efficient alternative to SPIDER3-single for sequence-based prediction of protein secondary structures. - Krzysztof Kotowski; Tomasz Smolarczyk; Irena Roterman-Konieczna; Katarzyna Stapor (J. Comput. Chem., 2021)

Federated Evaluation of nnU-Nets Enhanced with Domain Knowledge for Brain Tumor Segmentation. - Krzysztof Kotowski; Szymon Adamski; Bartosz Machura; Wojciech Malara; Lukasz Zarudzki; Jakub Nalepa (BrainLes@MICCAI (2), 2022)

Infusing Domain Knowledge into nnU-Nets for Segmenting Brain Tumors in MRI. - Krzysztof Kotowski; Szymon Adamski; Bartosz Machura; Lukasz Zarudzki; Jakub Nalepa (BrainLes@MICCAI, 2022)

Robustifying Automatic Assessment of Brain Tumor Progression from MRI. - Krzysztof Kotowski; Bartosz Machura; Jakub Nalepa (BrainLes@MICCAI, 2022)

Lightweight ProteinUnet2 network for protein secondary structure prediction: a step towards proper evaluation. - Katarzyna Stapor; Krzysztof Kotowski; Tomasz Smolarczyk; Irena Roterman (BMC Bioinform., 2022)

Segmenting pediatric optic pathway gliomas from MRI using deep learning. - Jakub Nalepa; Szymon Adamski; Krzysztof Kotowski; Sylwia Chelstowska; Magdalena Machnikowska-Sokolowska; Oskar Bozek; Agata Wisz; Elzbieta Jurkiewicz (Comput. Biol. Medicine, 2022)

Machine Learning Detects Anomalies in OPS-SAT Telemetry. - Bogdan Ruszczak; Krzysztof Kotowski; Jacek Andrzejewski; Alicja Musial; David Evans; Vladimir Zelenevskiy; Sam Bammens; Rodrigo Laurinovics; Jakub Nalepa (ICCS (1), 2023)

The importance of ocular artifact removal in single-trial ERP analysis: The case of the N250 in face learning. - Krzysztof Kotowski; Jeremi K. Ochab; Katarzyna Stapor; Werner Sommer (Biomed. Signal Process. Control., 2023)

Detecting liver cirrhosis in computed tomography scans using clinically-inspired and radiomic features. - Krzysztof Kotowski; Damian Kucharski; Bartosz Machura; Szymon Adamski; Benjamín Gutiérrez-Becker; Agata Krason; Lukasz Zarudzki; Jean Tessier; Jakub Nalepa (Comput. Biol. Medicine, 2023)

Deep learning automates bidimensional and volumetric tumor burden measurement from MRI in pre- and post-operative glioblastoma patients. - Jakub Nalepa; Krzysztof Kotowski; Bartosz Machura; Szymon Adamski; Oskar Bozek; Bartosz Eksner; Bartosz Kokoszka; Tomasz Pekala; Mateusz Radom; Marek Strzelczak; Lukasz Zarudzki; Agata Krason; et al. (Comput. Biol. Medicine, 2023)

OXI: An online tool for visualization and annotation of satellite time series data. - Bogdan Ruszczak; Krzysztof Kotowski; Jacek Andrzejewski; Christoph Haskamp; Jakub Nalepa (SoftwareX, 2023)

Automated Hepatocellular Carcinoma Analysis in Multi-phase CT with Deep Learning. - Krzysztof Kotowski; Bartosz Machura; Damian Kucharski; Benjamín Gutiérrez-Becker; Agata Krason; Jean Tessier; Jakub Nalepa (CaPTion@MICCAI, 2024)

Protein intrinsic disorder prediction using Attention U-Net and ProtTrans protein language model. - Krzysztof Kotowski; Irena Roterman; Katarzyna Stapor (CoRR, 2024)

European Space Agency Benchmark for Anomaly Detection in Satellite Telemetry. - Krzysztof Kotowski; Christoph Haskamp; Jacek Andrzejewski; Bogdan Ruszczak; Jakub Nalepa; Daniel Lakey; Peter Collins; Aybike Kolmas; Mauro Bartesaghi; Jose Martinez-Heras; Gabriele De Canio (CoRR, 2024)

The OPS-SAT benchmark for detecting anomalies in satellite telemetry. - Bogdan Ruszczak; Krzysztof Kotowski; David Evans; Jakub Nalepa (CoRR, 2024)

DisorderUnetLM: Validating ProteinUnet for efficient protein intrinsic disorder prediction. - Krzysztof Kotowski; Irena Roterman; Katarzyna Stapor (Comput. Biol. Medicine, 2025)

MASCOTS: Model-Agnostic Symbolic COunterfactual explanations for Time Series. - Dawid Pludowski; Francesco Spinnato; Piotr Wilczynski; Krzysztof Kotowski; Evridiki Vasileia Ntagiou; Riccardo Guidotti; Przemyslaw Biecek (CoRR, 2025)

Trojan Horse Hunt in Time Series Forecasting for Space Operations. - Krzysztof Kotowski; Ramez Shendy; Jakub Nalepa; Przemyslaw Biecek; Piotr Wilczynski; Agata Kaczmarek; Dawid Pludowski; Artur Janicki; Evridiki Vasileia Ntagiou (CoRR, 2025)

Fake or Real: The Impostor Hunt in Texts for Space Operations. - Agata Kaczmarek; Dawid Pludowski; Piotr Wilczynski; Krzysztof Kotowski; Ramez Shendy; Evridiki Vasileia Ntagiou; Jakub Nalepa; Artur Janicki; Przemyslaw Biecek (CoRR, 2025)