CLICK - topology-independent comparison of biomolecular 3D structures. - M. N. Nguyen; Kuan Pern Tan; Mallur S. Madhusudhan (Nucleic Acids Res., 2011)

DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins. - Kuan Pern Tan; Raghavan Varadarajan; Mallur S. Madhusudhan (Nucleic Acids Res., 2011)

Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins. - Kuan Pern Tan; Thanh Binh Nguyen 007; Siddharth Patel; Raghavan Varadarajan; Mallur S. Madhusudhan (Nucleic Acids Res., 2013)

TSpred: a web server for the rational design of temperature-sensitive mutants. - Kuan Pern Tan; Shruti Khare; Raghavan Varadarajan; Mallur Srivatsan Madhusudhan (Nucleic Acids Res., 2014)

Characterization of physicochemical environments of proteins - Kuan Pern Tan (2017)