Computational analysis of the structural progression of human glomeruli in diabetic nephropathy. - Brandon G. Ginley; John Tomaszewski 001; Kuang-Yu Jen; Agnes B. Fogo; Sanjay Jain 006; Pinaki Sarder (Digital Pathology, 2018)

Deep variational auto-encoders for unsupervised glomerular classification. - Brendon Lutnick; Rabi Yacoub; Kuang-Yu Jen; John Tomaszewski 001; Sanjay Jain 006; Pinaki Sarder (Digital Pathology, 2018)

Iterative annotation to ease neural network training: Specialized machine learning in medical image analysis. - Brendon Lutnick; Brandon Ginley; Darshana Govind; Sean D. McGarry; Peter S. LaViolette; Rabi Yacoub; Sanjay Jain 006; John Tomaszewski 001; Kuang-Yu Jen; Pinaki Sarder (CoRR, 2018)

Examining structural patterns and causality in diabetic nephropathy using inter-glomerular distance and Bayesian graphical models. - Aurijoy Majumdar; Kuang-Yu Jen; Sanjay Jain 006; John Tomaszewski 001; Pinaki Sarder (Digital Pathology, 2019)

An integrated iterative annotation technique for easing neural network training in medical image analysis. - Brendon Lutnick; Brandon Ginley; Darshana Govind; Sean D. McGarry; Peter S. LaViolette; Rabi Yacoub; Sanjay Jain 006; John Tomaszewski 001; Kuang-Yu Jen; Pinaki Sarder (Nat. Mach. Intell., 2019)

Probabilistic modelling of diabetic nephropathy progression. - Samuel P. Border; Kuang-Yu Jen; Washington L. C. dos-Santos; John Tomaszewski 001; Pinaki Sarder (Digital Pathology, 2020)

Fully automated classification of glomerular lesions in lupus nephritis. - Brandon Ginley; Kuang-Yu Jen; Avi Rosenberg; Giovanni Maria Rossi; Sanjay Jain 006; Pinaki Sarder (Digital Pathology, 2020)

Deep learning-based automated hot-spot detection and tumor grading in human gastrointestinal neuroendocrine tumor. - Darshana Govind; Kuang-Yu Jen; Pinaki Sarder (Digital Pathology, 2020)

Generative modeling for label-free glomerular modeling and classification. - Brendon Lutnick; Brandon Ginley; Kuang-Yu Jen; Wen Dong 001; Pinaki Sarder (Digital Pathology, 2020)

Neural Network Segmentation of Interstitial Fibrosis, Tubular Atrophy, and Glomerulosclerosis in Renal Biopsies. - Brandon Ginley; Kuang-Yu Jen; Avi Rosenberg; Felicia Yen; Sanjay Jain 006; Agnes B. Fogo; Pinaki Sarder (CoRR, 2020)

Automated detection and quantification of Wilms' Tumor 1-positive cells in murine diabetic kidney disease. - Darshana Govind; Briana A. Santo; Brandon Ginley; Rabi Yacoub; Avi Z. Rosenberg; Kuang-Yu Jen; Vighnesh Walavalkar; Gregory E. Wilding; Amber M. Worral; Imtiaz Mohammad; Pinaki Sarder (Digital Pathology, 2021)

In silico multi-compartment detection based on multiplex immunohistochemical staining in renal pathology. - Kuang-Yu Jen; Leema Krishna Murali; Brendon Lutnick; Brandon Ginley; Darshana Govind; Hidetoshi Mori; Guofeng Gao; Pinaki Sarder (Digital Pathology, 2021)

A distributed system improves inter-observer and AI concordance in annotating interstitial fibrosis and tubular atrophy. - Avinash Kammardi Shashiprakash; Brendon Lutnick; Brandon Ginley; Darshana Govind; Nicholas J. Lucarelli; Kuang-Yu Jen; Avi Z. Rosenberg; Anatoly Urisman; Vighnesh Walavalkar; Jonathan E. Zuckerman; Marco Delsante; Mei Lin Z. Bissonnette; et al. (Digital Pathology, 2021)

Automated tubular morphometric visualization for whole kidney biopsy. - Neil Kavthekar; Brandon Ginley; Samuel P. Border; Nicholas J. Lucarelli; Kuang-Yu Jen; Pinaki Sarder (Digital and Computational Pathology, 2022)

A cloud-based tool for federated segmentation of whole slide images. - Brendon Lutnick; David Manthey; Jan U. Becker; Jonathan E. Zuckerman; Luis Rodrigues; Kuang Yu Jen; Pinaki Sarder (Digital and Computational Pathology, 2022)

Improving quantification of renal fibrosis using deep-DUET. - Samuel P. Border; Avi Rosenberg; Jarcy Zee; Richard M. Levenson 001; Kuang-Yu Jen; Pinaki Sarder; Farzad Fereidouni (Digital and Computational Pathology, 2023)

Automated reference kidney histomorphometry using a panoptic segmentation neural network correlates to patient demographics and creatinine. - Brandon Ginley; Nicholas J. Lucarelli; Jarcy Zee; Sanjay Jain 006; Seung Seok Han; Luis Rodrigues; Michelle L. Wong; Kuang-Yu Jen; Pinaki Sarder (Digital and Computational Pathology, 2023)

Label-free evaluation of lung and heart transplant biopsies using virtual staining. - Yuzhu Li; Nir Pillar; Tairan Liu; Guangdong Ma; Yuxuan Qi; Kevin de Haan; Yijie Zhang; Xilin Yang; Adrian J. Correa; Guangqian Xiao; Kuang-Yu Jen; Kenneth A. Iczkowski; et al. (CoRR, 2024)

exKidneyBERT: a language model for kidney transplant pathology reports and the crucial role of extended vocabularies. - Tiancheng Yang; Ilia Sucholutsky; Kuang-Yu Jen; Matthias Schonlau (PeerJ Comput. Sci., 2024)