Transcriptator: Computational Pipeline to Annotate Transcripts and Assembled Reads from RNA-Seq Data. - Kumar Parijat Tripathi; Daniela Evangelista; Raffaele Cassandra; Mario R. Guarracino (CIBB, 2014)

A Web Resource on Skeletal Muscle Transcriptome of Primates. - Daniela Evangelista; Mariano Avino; Kumar Parijat Tripathi; Mario Rosario Guarracino (CIBB, 2015)

Comparison of Gene Expression Signature Using Rank Based Statistical Inference. - Kumar Parijat Tripathi; Sonali Gopichand Chavan; Seetharaman Parashuraman; Marina Piccirillo; Sara Magliocca; Mario Rosario Guarracino (CIBB, 2015)

HvDBase: A Web Resource on Hydra Vulgaris Transcriptome. - Daniela Evangelista; Kumar Parijat Tripathi; Valentina Scuotto; Mario Rosario Guarracino (IWBBIO (2), 2015)

An Atlas of annotations of Hydra vulgaris transcriptome. - Daniela Evangelista; Kumar Parijat Tripathi; Mario Rosario Guarracino (BMC Bioinform., 2016)

Effects of Mecp2 loss of function in embryonic cortical neurons: a bioinformatics strategy to sort out non-neuronal cells variability from transcriptome profiling. - Marcella Vacca; Kumar Parijat Tripathi; Luisa Speranza; Riccardo Aiese Cigliano; Francesco Scalabrì; Federico Marracino; Michele Madonna; Walter Sanseverino; Carla Perrone-Capano; Mario Rosario Guarracino; Maurizio D'Esposito (BMC Bioinform., 2016)

A mixed integer programming-based global optimization framework for analyzing gene expression data. - Giovanni Felici; Kumar Parijat Tripathi; Daniela Evangelista; Mario Rosario Guarracino (J. Glob. Optim., 2017)

Ensemble of rankers for efficient gene signature extraction in smoke exposure classification. - Maurizio Giordano; Kumar Parijat Tripathi; Mario Rosario Guarracino (BMC Bioinform., 2018)

An integrated approach to infer cross-talks between intracellular protein transport and signaling pathways. - Kumar Parijat Tripathi; Marina Piccirillo; Mario Rosario Guarracino (BMC Bioinform., 2018)