CPPsite: a curated database of cell penetrating peptides. - Ankur Gautam; Harinder Singh; Atul Tyagi; Kumardeep Chaudhary; Rahul Kumar; Pallavi Kapoor; G. P. S. Raghava (Database J. Biol. Databases Curation, 2012)

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. - Divya Mehta; Priya Anand; Vineet Kumar; Anshika Joshi; Deepika Mathur; Sandeep Singh; Abhishek Tuknait; Kumardeep Chaudhary; Shailendra K. Gautam; Ankur Gautam; Grish C. Varshney; Gajendra P. S. Raghava (Database J. Biol. Databases Curation, 2014)

Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides. - Ankur Gautam; Kumardeep Chaudhary; Sandeep Singh; Anshika Joshi; Priya Anand; Abhishek Tuknait; Deepika Mathur; Grish C. Varshney; Gajendra P. S. Raghava (Nucleic Acids Res., 2014)

AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. - Ravi Kumar 008; Kumardeep Chaudhary; Minakshi Sharma; Gandharva Nagpal; Jagat Singh Chauhan; Sandeep Singh; Ankur Gautam; Gajendra P. S. Raghava (Nucleic Acids Res., 2015)

CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides. - Piyush Agrawal; Sherry Bhalla; Salman Sadullah Usmani; Sandeep Singh; Kumardeep Chaudhary; Gajendra P. S. Raghava; Ankur Gautam (Nucleic Acids Res., 2016)

SATPdb: a database of structurally annotated therapeutic peptides. - Sandeep Singh; Kumardeep Chaudhary; Sandeep Kumar Dhanda; Sherry Bhalla; Salman Sadullah Usmani; Ankur Gautam; Abhishek Tuknait; Piyush Agrawal; Deepika Mathur; Gajendra P. S. Raghava (Nucleic Acids Res., 2016)

A machine learning-based approach to determine infection status in recipients of BBV152 (Covaxin) whole-virion inactivated SARS-CoV-2 vaccine for serological surveys. - Prateek Singh; Rajat Ujjainiya; Satyartha Prakash; Salwa Naushin; Viren Sardana; Nitin Bhatheja; Ajay Pratap Singh; Joydeb Barman; Kartik Kumar; Saurabh Gayali; Raju Khan; Birendra Singh Rawat; et al. (Comput. Biol. Medicine, 2022)

Editorial: Recent advances in peptide informatics: challenges and opportunities. - Rahul Kumar; Kumardeep Chaudhary; Sandeep Kumar Dhanda (Frontiers Bioinform., 2023)

A systematic review on federated learning system: a new paradigm to machine learning. - Kumardeep Chaudhary; Ravinder Kumar; Nitin Saxena 002 (Knowl. Inf. Syst., 2025)

Ameliorating clustered federated learning using grey wolf optimization algorithm for healthcare IoT devices. - Kumardeep Chaudhary; Ravinder Kumar; Nitin Saxena 002 (J. Supercomput., 2025)

Type 2 diabetes mellitus associated pancreatic cancer prediction using combinations of machine learning models. - Surabhi Seth; Kumardeep Chaudhary; Srinivasan Ramachandran (Biomed. Signal Process. Control., 2026)