Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data. - Dongjun Chung; Pei Fen Kuan; Bo Li 015; Rajendran Sanalkumar; Kun Liang 001; Emery H. Bresnick; Colin N. Dewey; Sündüz Keles (PLoS Comput. Biol., 2011)

Detecting differential binding of transcription factors with ChIP-seq. - Kun Liang 001; Sündüz Keles (Bioinform., 2012)

Normalization of ChIP-seq data with control. - Kun Liang 001; Sündüz Keles (BMC Bioinform., 2012)