A robust correlation estimator and nonlinear recurrent model to infer genetic interactions in Saccharomyces cerevisiae and pathways of pulmonary disease in Homo sapiens. - Cheng-Long Chuang; Chung-Ming Chen; Wai-Si Wong; Kun-Nan Tsai; Err-Cheng Chan; Joe-Air Jiang (Biosyst., 2009)

Genomic splice site prediction algorithm based on nucleotide sequence pattern for RNA viruses. - Kun-Nan Tsai; Shu-Hung Lin; Shin-Ru Shih; Jhih-Siang Lai; Chung-Ming Chen (Comput. Biol. Chem., 2009)

Enhancement of Initial Equivalency for Protein Structure Alignment Based on Encoded Local Structures. - Kenneth Hung; Jui-Chih Wang; Cheng-Wei Chen; Cheng-Long Chuang; Kun-Nan Tsai; Chung-Ming Chen (IEEE Trans. Inf. Technol. Biomed., 2012)

Inferring microbial interaction network from microbiome data using RMN algorithm. - Kun-Nan Tsai; Shu-Hsi Lin; Wei-Chung Liu; Daryi Wang (BMC Syst. Biol., 2015)