Methy-Pipe: An integrated bioinformatics data analysis pipeline for whole genome methylome analysis. - Peiyong Jiang; Xiaoxi Sun; Eric Z. Chen; Kun Sun 003; Rossa W. K. Chiu; Yuk Ming Dennis Lo; Hao Sun 001 (BIBM Workshops, 2010)

Genome-wide identification of TF-miRNA regulatory networks in myogenesis. - Leina Lu; Liang Zhou; Eric Z. Chen; Kun Sun 003; Peiyong Jiang; Susie Su; Lijun Wang; Hao Sun 001; Huating Wang (BIBM Workshops, 2011)

YY1TargetDB: an integral information resource for Yin Yang 1 target loci. - Andy M. Guo; Kun Sun 003; Xiaoxi Su; Huating Wang; Hao Sun 001 (Database J. Biol. Databases Curation, 2013)

The Online Diagnosis System for sanger sequencing based genetic testing. - Kun Sun 003; Yuet-Ping Yuen; Huating Wang; Hao Sun 001 (BigComp, 2014)

Development of bioinformatics platforms for methylome and transcriptome data analysis. - Kun Sun 003 (2014)

BSviewer: a genotype-preserving, nucleotide-level visualizer for bisulfite sequencing data. - Kun Sun 003; Fiona F. M. Lun; Peiyong Jiang; Hao Sun 001 (Bioinform., 2017)

GeneCT: a generalizable cancerous status and tissue origin classifier for pan-cancer biopsies. - Kun Sun 003; Jiguang Wang; Huating Wang; Hao Sun 001 (Bioinform., 2018)

Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data. - Kun Sun 003 (Bioinform., 2020)

Msuite: A High-Performance and Versatile DNA Methylation Data-Analysis Toolkit. - Kun Sun 003; Lishi Li; Li Ma; Yu Zhao; Lin Deng; Huating Wang; Hao Sun 001 (Patterns, 2020)

NAMS webserver: coding potential assessment and functional annotation of plant transcripts. - Kun Sun 003; Huating Wang; Hao Sun 001 (Briefings Bioinform., 2021)