MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules. - Kunde Ramamoorthy Govindarajan; Pandjassarame Kangueane; Tin Wee Tan; Shoba Ranganathan (Bioinform., 2003)

T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System. - Daniel Tay; Kunde Ramamoorthy Govindarajan; Asif M. Khan; Terenze Ong; Hanif M. Samad; Wei Soh; Minyan Tong; Fan Zhang; Tin Wee Tan (BMC Bioinform., 2010)

Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice. - Molly A. Bogue; Stephen C. Grubb; David O. Walton; Vivek M. Philip; Georgi Kolishovski; Tim Stearns; Matthew H. Dunn; Daniel A. Skelly; Beena Kadakkuzha; Gregg TeHennepe; Kunde Ramamoorthy Govindarajan; Elissa J. Chesler (Nucleic Acids Res., 2018)

Mouse Phenome Database: a data repository and analysis suite for curated primary mouse phenotype data. - Molly A. Bogue; Vivek M. Philip; David O. Walton; Stephen C. Grubb; Matthew H. Dunn; Georgi Kolishovski; Jake Emerson; Gaurab Mukherjee; Tim Stearns; Hao He; Vinita Sinha; Beena Kadakkuzha; et al. (Nucleic Acids Res., 2020)

MVAR: a mouse variation registry. - Bahá El Kassaby; Kunde Ramamoorthy Govindarajan; Francisco Castellanos; Carol Bult (BCB, 2021)

Mouse Phenome Database: towards a more FAIR-compliant and TRUST-worthy data repository and tool suite for phenotypes and genotypes. - Molly A. Bogue; Robyn L. Ball; Vivek M. Philip; David O. Walton; Matthew H. Dunn; Georgi Kolishovski; Anna Lamoureux; Matthew Gerring; Hongping Liang; Jake Emerson; Tim Stearns; Hao He; et al. (Nucleic Acids Res., 2023)

Aryana-bs: context-aware alignment of bisulfite-sequencing reads. - Hassan Nikaein; Ali Sharifi-Zarchi; Afsoon Afzal; Saeedeh Ezzati; Farzane Rasti; Hamidreza Chitsaz; Kunde Ramamoorthy Govindarajan (BMC Bioinform., 2025)