Application of a High-Performance, Special-Purpose Computer, GRAPE-2A, to Molecular Dynamics. - Junichi Higo; Shigeru Endo; Kuniaki Nagayama; Tomoyoshi Ito; Toshiyuki Fukushige; Toshikazu Ebisuzaki; Daiichiro Sugimoto; Hiroo Miyagawa; Kunihiro Kitamura; Junichiro Makino (J. Comput. Chem., 1994)

Error Evaluation in the Disign of a Special-Purpose Processor That Calculates Nonbonded Forces in Molecular Dynamics Simulations. - Takashi Amisaki; Takaji Fujiwara; Akihiro Kusumi; Hiroo Miyagawa; Kunihiro Kitamura (J. Comput. Chem., 1995)

MOE: A Special-Purpose Parallel Computer for High-Speed, Large-Scale Molecular Orbital Calculation. - Koji Hashimoto; Hiroto Tomita; Koji Inoue; Katsuhiko Metsugi; Kazuaki J. Murakami; Shinjiro Inabata; So Yamada; Nobuaki Miyakawa; Hajime Takashima; Kunihiro Kitamura; Shigeru Obara; Takashi Amisaki; et al. (SC, 1999)

Is large-scale ab initio Hartree-Fock calculation chemically accurate? Toward improved calculation of biological molecule properties. - Hajime Takashima; Kunihiro Kitamura; Kazutoshi Tanabe; Umpei Nagashima (J. Comput. Chem., 1999)

Development of MD Engine: High-speed accelerator with parallel processor design for molecular dynamics simulations. - Shinjiro Toyoda; Hiroh Miyagawa; Kunihiro Kitamura; Takashi Amisaki; Eiri Hashimoto; Hitoshi Ikeda; Akihiro Kusumi; Nobuaki Miyakawa (J. Comput. Chem., 1999)

A novel parallel algorithm for large-scale Fock matrix construction with small locally distributed memory architectures: RT parallel algorithm. - Hajime Takashima; So Yamada; Shigeru Obara; Kunihiro Kitamura; Shinjiro Inabata; Nobuaki Miyakawa; Kazutoshi Tanabe; Umpei Nagashima (J. Comput. Chem., 2002)

Development of hardware accelerator for molecular dynamics simulations: A computation board that calculates nonbonded interactions in cooperation with fast multipole method. - Takashi Amisaki; Shinjiro Toyoda; Hiroh Miyagawa; Kunihiro Kitamura (J. Comput. Chem., 2003)

Binding Free-Energy Calculation Is a Powerful Tool for Drug Optimization: Calculation and Measurement of Binding Free Energy for 7-Azaindole Derivatives to Glycogen Synthase Kinase-3β. - Kunihiro Kitamura; Yunoshin Tamura; Tomokazu Ueki; Koji Ogata; Shigeho Noda; Ryutaro Himeno; Hiroshi Chuman (J. Chem. Inf. Model., 2014)