The Better Alignment Among Output Alignments. - Kuo-Si Huang; Kuo-Tsung Tseng; Chang-Biau Yang (METMBS, 2005)

Dynamic programming algorithms for the mosaic longest common subsequence problem. - Kuo-Si Huang; Chang-Biau Yang; Kuo-Tsung Tseng; Yung-Hsing Peng; Hsing-Yen Ann (Inf. Process. Lett., 2007)

Near-Optimal Block Alignments. - Kuo-Tsung Tseng; Chang-Biau Yang; Kuo-Si Huang; Yung-Hsing Peng (IEICE Trans. Inf. Syst., 2008)

Efficient algorithms for finding interleaving relationship between sequences. - Kuo-Si Huang; Chang-Biau Yang; Kuo-Tsung Tseng; Hsing-Yen Ann; Yung-Hsing Peng (Inf. Process. Lett., 2008)

A Fault-Tolerant Routing Algorithm with Safety Vectors on the (n, k)-Star Graph. - Chiao-Wei Chiu; Chang-Biau Yang; Kuo-Si Huang; Chiou-Ting Tseng (ISPAN, 2009)

Disulfide bonding state prediction with SVM based on protein types. - Chih-Ying Lin; Chang-Biau Yang; Chiou-Yi Hor; Kuo-Si Huang (BIC-TA, 2010)

An Algorithm and Applications to Sequence Alignment with Weighted Constraints. - Yung-Hsing Peng; Chang-Biau Yang; Kuo-Tsung Tseng; Kuo-Si Huang (Int. J. Found. Comput. Sci., 2010)

Efficient indexing algorithms for one-dimensional discretely-scaled strings. - Yung-Hsing Peng; Chang-Biau Yang; Kuo-Si Huang; Hsing-Yen Ann (Inf. Process. Lett., 2010)

An Adaptive Heuristic Algorithm with the Probabilistic Safety Vector for Fault-Tolerant Routing on the (n, k)-Star Graph. - Chiao-Wei Chiu; Kuo-Si Huang; Chang-Biau Yang; Chiou-Ting Tseng (Int. J. Found. Comput. Sci., 2014)

Flexible Dynamic Time Warping for Time Series Classification. - Che-Jui Hsu; Kuo-Si Huang; Chang-Biau Yang; Yi-Pu Guo (ICCS, 2015)

A Diagonal-Based Algorithm for the Constrained Longest Common Subsequence Problem. - Siang-Huai Hung; Chang-Biau Yang; Kuo-Si Huang (ICS, 2018)

A diagonal-based algorithm for the longest common increasing subsequence problem. - Shou-Fu Lo; Kuo-Tsung Tseng; Chang-Biau Yang; Kuo-Si Huang (Theor. Comput. Sci., 2020)

An efficient algorithm for the longest common palindromic subsequence problem. - Ting-Wei Liang; Chang-Biau Yang; Kuo-Si Huang (Theor. Comput. Sci., 2022)

An Algorithm for Finding the Longest Common Almost Wave Subsequence with the Trend. - Tsung-Lin Lu; Kuo-Si Huang; Chang-Biau Yang (IIAI-AAI, 2023)

An Improved Algorithm with Azimuth Clustering for Detecting Turning Regions on GPS Trajectories. - Kuo-Si Huang; Yu-Chen Lin; Chang-Biau Yang; Ho-Chun Lin; Yung-Hsing Peng; Szu-Hsuan Wang (TAAI (1), 2023)

Linear-space S-table algorithms for the longest common subsequence problem. - Bi-Shiang Lin; Kuo-Si Huang; Chang-Biau Yang (Theor. Comput. Sci., 2023)

The merged longest common increasing subsequence problem. - Chien-Ting Lee; Chang-Biau Yang; Kuo-Si Huang (Theor. Comput. Sci., 2025)