Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information. - Weijun Luo; Kurt D. Hankenson; Peter J. Woolf (BMC Bioinform., 2008)

GAGE: generally applicable gene set enrichment for pathway analysis. - Weijun Luo; Michael S. Friedman; Kerby Shedden; Kurt D. Hankenson; Peter J. Woolf (BMC Bioinform., 2009)

Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization. - Weijun Luo; Michael S. Friedman; Kurt D. Hankenson; Peter J. Woolf (BMC Syst. Biol., 2011)