Neighborhood embedding and re-ranking of disease genes with ADAGIO. - Mert Erden; Megan Gelement; Sarrah Hakimjee; Kyla Levin; Mary-Joy Sidhom; Kapil Devkota; Lenore J. Cowen (BCB, 2022)

ChatDBG: An AI-Powered Debugging Assistant. - Kyla Levin; Nicolas van Kempen; Emery D. Berger; Stephen N. Freund (CoRR, 2024)

ChatDBG: Augmenting Debugging with Large Language Models. - Kyla Levin; Nicolas van Kempen; Emery D. Berger; Stephen N. Freund (Proc. ACM Softw. Eng., 2025)

Effective LLM-Driven Code Generation with Pythoness. - Kyla Levin; Kyle Gwilt; Emery D. Berger; Stephen N. Freund (CoRR, 2025)