A Symbolic Logic Strategy For Mapping Biological Concepts in the HERBE Prototype. - Eric G. Stephan; George Chin Jr.; Kyle R. Klicker; Abigail L. Corrigan; Heidi J. Sofia (CSB, 2003)

Exploring Genomic Context Patterns for Rhodobacter Sphaeroides in the HERBE Knowledge Discovery Environment. - Heidi J. Sofia; Abigail L. Corrigan; Kyle R. Klicker; George Chin Jr.; Eric G. Stephan (CSB, 2004)

Enabling Systems Biology: A Scientific Problem-Solving Environment. - Mudita Singhal; Eric G. Stephan; Kyle R. Klicker; Lynn Trease; George Chin Jr.; Deborah K. Gracio; Deborah A. Payne (International Conference on Computational Science, 2004)

Integrating Evolving Tools for Proteomics Research. - Susan Havre; Mudita Singhal; Banu Gopalan; Deborah A. Payne; Kyle R. Klicker; Gary Kiebel; Kenneth J. Auberry; Eric G. Stephan; Bobbie-Jo M. Webb-Robertson; Deborah K. Gracio (METMBS, 2004)

Computational Cell Environment: A Problem Solving Environment for Integrating Diverse Biological Data. - Kyle R. Klicker; Mudita Singhal; Eric G. Stephan; Lynn Trease; Deborah K. Gracio (METMBS, 2004)

Synchronized Biological Knowledge and Data Management: A Hybrid Approach. - Eric G. Stephan; George Chin Jr.; Abigail L. Corrigan; Kyle R. Klicker; Heidi J. Sofia (METMBS, 2004)

Supporting Computational Visual Theories in Biology. - George Chin Jr.; Eric G. Stephan; Kyle R. Klicker; Abigail L. Corrigan; Heidi J. Sofia (VL/HCC, 2004)

Problem Solving Environment Approach to Integrating Diverse Biological Data Sources. - Eric G. Stephan; Kyle R. Klicker; Mudita Singhal; Heidi J. Sofia (CSB Workshops, 2005)

Bioinformatics Approach for Exploring MS/MS Proteomics Data. - Mudita Singhal; Kyle R. Klicker; George Chin Jr.; Lynn Trease; Eric G. Stephan; Deborah K. Gracio (HICSS, 2005)

Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge. - Christopher S. Oehmen; Lee Ann McCue; Joshua N. Adkins; Katrina M. Waters; Tim Carlson; William R. Cannon; Bobbie-Jo M. Webb-Robertson; Douglas J. Baxter; Elena S. Peterson; Mudita Singhal; Anuj R. Shah; Kyle R. Klicker (SC, 2006)

Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager. - Anuj R. Shah; Mudita Singhal; Kyle R. Klicker; Eric G. Stephan; H. Steven Wiley; Katrina M. Waters (Bioinform., 2007)

PQuad - a visual analysis platform for proteomic data exploration of microbial organisms. - Bobbie-Jo M. Webb-Robertson; Elena S. Peterson; Mudita Singhal; Kyle R. Klicker; Christopher S. Oehmen; Joshua N. Adkins; Susan L. Havre (Bioinform., 2007)