AREM: Aligning Short Reads from ChIP-Sequencing by Expectation Maximization. - Daniel Newkirk; Jacob Biesinger; Alvin Chon; Kyoko Yokomori; Xiaohui Xie (J. Comput. Biol., 2011)

Striated myocyte structural integrity: Automated analysis of sarcomeric z-discs. - Tessa Altair Morris; Jasmine Naik; Kirby Sinclair Fibben; Xiangduo Kong; Tohru Kiyono; Kyoko Yokomori; Anna Grosberg (PLoS Comput. Biol., 2020)

Single-Cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy. - Lujia Chen; Xiangduo Kong; Kevin Gregory Johnston; Ali Mortazavi; Todd Holmes; Zhiqun Tan; Kyoko Yokomori; Xiangmin Xu (Zenodo, 2024)