Identification of optimal classification functions for biological sample and state discrimination from metabolic profiling data. - Kyongbum Lee; Daehee Hwang; Tadaaki Yokoyama; George Stephanopoulos; Gregory Stephanopoulos; Martin L. Yarmush (Bioinform., 2004)

An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality. - Jeongah Yoon; Anselm Blumer; Kyongbum Lee (Bioinform., 2006)

Tendency Stoichiometric Modeling of Metabolic Pathways. - Foteini Makrydaki; Kyongbum Lee; Christos Georgakis 002 (ACC, 2007)

Metabolic Flux Profiling of Reaction Modules in Liver Drug Transformation. - Jeongah Yoon; Kyongbum Lee (Pacific Symposium on Biocomputing, 2007)

Modular decomposition of metabolic reaction networks based on flux analysis and pathway projection. - Jeongah Yoon; Yaguang Si; Ryan Nolan; Kyongbum Lee (Bioinform., 2007)

An algorithm for identifying dominant-edge metabolic pathways. - Ehsan Ullah; Kyongbum Lee; Soha Hassoun (ICCAD, 2009)

Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic flux determination and optimal metabolic network design. - Brett A. Boghigian; Hai Shi; Kyongbum Lee; Blaine A. Pfeifer (BMC Syst. Biol., 2010)

Identification of Biochemical Network Modules Based on Shortest Retroactive Distances. - Gautham Vivek Sridharan; Soha Hassoun; Kyongbum Lee (PLoS Comput. Biol., 2011)

Metabolic Flux-Based Modularity using Shortest Retroactive distances. - Gautham Vivek Sridharan; Michael Yi; Soha Hassoun; Kyongbum Lee (BMC Syst. Biol., 2012)

Gene modification identification under flux capacity uncertainty. - Mona Yousofshahi; Michael Orshansky; Kyongbum Lee; Soha Hassoun (DAC, 2013)

Probabilistic strain optimization under constraint uncertainty. - Mona Yousofshahi; Michael Orshansky; Kyongbum Lee; Soha Hassoun (BMC Syst. Biol., 2013)

Discovery of substrate cycles in large scale metabolic networks using hierarchical modularity. - Gautham Vivek Sridharan; Ehsan Ullah; Soha Hassoun; Kyongbum Lee (BMC Syst. Biol., 2015)

PROXIMAL: a method for Prediction of Xenobiotic Metabolism. - Mona Yousofshahi; Sara Manteiga; Charmian Wu; Kyongbum Lee; Soha Hassoun (BMC Syst. Biol., 2015)

PreProPath: An Uncertainty-Aware Algorithm for Identifying Predictable Profitable Pathways in Biochemical Networks. - Ehsan Ullah; Mark Walker; Kyongbum Lee; Soha Hassoun (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

An Advanced Workflow for Metabolite Annotation. - Neda Hassanpour; Nicholas Alden; Kyongbum Lee; Soha Hassoun (BCB, 2017)