An evolutionary classification of the metallo-beta-lactamase fold proteins. - L. Aravind (Silico Biol., 1998)

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. - Alejandro A. Schäffer; Yuri I. Wolf; Chris P. Ponting; Eugene V. Koonin; L. Aravind; Stephen F. Altschul (Bioinform., 1999)

The Histone Database: a comprehensive WWW resource for histones and histone fold-containing proteins. - Steven A. Sullivan; L. Aravind; Izabela Makalowska; Andreas D. Baxevanis; David Landsman (Nucleic Acids Res., 2000)

MEDS and PocR are novel domains with a predicted role in sensing simple hydrocarbon derivatives in prokaryotic signal transduction systems. - Vivek Anantharaman; L. Aravind (Bioinform., 2005)

The ASCH superfamily: novel domains with a fold related to the PUA domain and a potential role in RNA metabolism. - Lakshminarayan M. Iyer; A. Maxwell Burroughs; L. Aravind (Bioinform., 2006)

The DOMON domains are involved in heme and sugar recognition. - Lakshminarayan M. Iyer; Vivek Anantharaman; L. Aravind (Bioinform., 2007)

Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment. - Raja Jothi; Teresa M. Przytycka; L. Aravind (BMC Bioinform., 2007)

BEN: a novel domain in chromatin factors and DNA viral proteins. - Saraswathi Abhiman; Lakshminarayan M. Iyer; L. Aravind (Bioinform., 2008)

AMIN domains have a predicted role in localization of diverse periplasmic protein complexes. - Robson Francisco de Souza; Vivek Anantharaman; Sandro José de Souza; L. Aravind; Frederico J. Gueiros-Filho (Bioinform., 2008)

UMA and MABP domains throw light on receptor endocytosis and selection of endosomal cargoes. - Robson Francisco de Souza; L. Aravind (Bioinform., 2010)

CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes. - Thiago M. Venancio; L. Aravind (Bioinform., 2010)

Bacterial GRAS domain proteins throw new light on gibberellic acid response mechanisms. - Dapeng Zhang 001; Lakshminarayan M. Iyer; L. Aravind (Bioinform., 2012)

Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila. - Penelope Coggill; Ruth Y. Eberhardt; Robert D. Finn; Yuanyuan Chang; Lukasz Jaroszewski; Adam Godzik; Debanu Das; Qingping Xu; Herbert L. Axelrod; L. Aravind; Alexey G. Murzin; Alex Bateman (BMC Bioinform., 2013)

Filling out the structural map of the NTF2-like superfamily. - Ruth Y. Eberhardt; Yuanyuan Chang; Alex Bateman; Alexey G. Murzin; Herbert L. Axelrod; William C. Hwang; L. Aravind (BMC Bioinform., 2013)

LUD, a new protein domain associated with lactate utilization. - William C. Hwang; Constantina Bakolitsa; Marco Punta; Penelope Coggill; Alex Bateman; Herbert L. Axelrod; Neil D. Rawlings; Mayya Sedova; Scott N. Peterson; Ruth Y. Eberhardt; L. Aravind; Jaime Pascual; et al. (BMC Bioinform., 2013)

Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis. - Debanu Das; Alexey G. Murzin; Neil D. Rawlings; Robert D. Finn; Penelope Coggill; Alex Bateman; Adam Godzik; L. Aravind (BMC Bioinform., 2014)

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions. - Padmaja Natarajan; Marco Punta; Abhinav Kumar; Andrew P. Yeh; Adam Godzik; L. Aravind (BMC Bioinform., 2015)

Vms1 and ANKZF1 peptidyl-tRNA hydrolases release nascent chains from stalled ribosomes. - Rati Verma; Kurt M. Reichermeier; A. Maxwell Burroughs; Robert S. Oania; Justin M. Reitsma; L. Aravind; Raymond J. Deshaies (Nat., 2018)