CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures. - Kristian Vlahovicek; Alessandro Pintar; Laavanya Parthasarathi; Oliviero Carugo; Sándor Pongor (Nucleic Acids Res., 2005)

Absolute Net Charge and the Biological Activity of Oligopeptides. - Laavanya Parthasarathi; Marc Devocelle; Chresten R. Søndergaard; Ivan Baran; Colm O'Dushlaine; Norman E. Davey; Richard J. Edwards; Niamh Moran; Dermot Kenny; Denis C. Shields (J. Chem. Inf. Model., 2006)

Identification of Potential Small Molecule Peptidomimetics Similar to Motifs in Proteins. - Ivan Baran; Radka Svobodová Vareková; Laavanya Parthasarathi; Simon Suchomel; Fergal P. Casey; Denis C. Shields (J. Chem. Inf. Model., 2007)

Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs. - Laavanya Parthasarathi; Fergal P. Casey; Amelie Stein; Patrick Aloy; Denis C. Shields (J. Chem. Inf. Model., 2008)