Hidden Markov models and optimized sequence alignments. - Lawrence H. Smith; Lana Yeganova; W. John Wilbur (Comput. Biol. Chem., 2003)

Identification of related gene/protein names based on an HMM of name variations. - Lana Yeganova; Lawrence H. Smith; W. John Wilbur (Comput. Biol. Chem., 2004)

The Synergy Between PAV and AdaBoost. - W. John Wilbur; Lana Yeganova; Won Kim 003 (Mach. Learn., 2005)

How to interpret PubMed queries and why it matters. - Lana Yeganova; Donald C. Comeau; Won Kim 003; W. John Wilbur (J. Assoc. Inf. Sci. Technol., 2009)

Relationships between Borda voting and Zermelo ranking. - Lowell Bruce Anderson; Helena Dandurova; James E. Falk; Lana Yeganova (Soc. Choice Welf., 2009)

Identifying Abbreviation Definitions Machine Learning with Naturally Labeled Data. - Lana Yeganova; Donald C. Comeau; W. John Wilbur (ICMLA, 2010)

Text Mining Techniques for Leveraging Positively Labeled Data. - Lana Yeganova; Donald C. Comeau; Won Kim 003; W. John Wilbur (BioNLP@ACL, 2011)

Comparison of Two Methods for Finding Biomedical Categories in Medline. - Lana Yeganova; Won Kim 003; Donald C. Comeau; W. John Wilbur (ICMLA (2), 2011)

Topics in machine learning for biomedical literature analysis and text retrieval. - Rezarta Islamaj Dogan; Lana Yeganova (BMC Bioinform., 2011)

Machine learning with naturally labeled data for identifying abbreviation definitions. - Lana Yeganova; Donald C. Comeau; W. John Wilbur (BMC Bioinform., 2011)

Organizers. - Lana Yeganova (AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text, 2012)

Automatic Identification of Key Concepts in Large PubMed Retrievals. - Lana Yeganova; Vahan Grigoryan; Won Kim 003; W. John Wilbur (AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text, 2012)

Finding biomedical categories in Medline®. - Lana Yeganova; Won Kim 003; Donald C. Comeau; W. John Wilbur (J. Biomed. Semant., 2012)

Identifying well-formed biomedical phrases in MEDLINE® text. - Won Kim 003; Lana Yeganova; Donald C. Comeau; W. John Wilbur (J. Biomed. Informatics, 2012)

Reports on the 2012 AAAI Fall Symposium Series. - Rezarta Islamaj Dogan; Yolanda Gil; Haym Hirsh; Narayanan Chatapuram Krishnan; Michael Lewis 001; Çetin Meriçli; Parisa Rashidi; Victor Raskin; Samarth Swarup; Wei Sun; Julia M. Taylor; Lana Yeganova (AI Mag., 2013)

Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora. - Rezarta Islamaj Dogan; Donald C. Comeau; Lana Yeganova; W. John Wilbur (Database J. Biol. Databases Curation, 2014)

Retro: concept-based clustering of biomedical topical sets. - Lana Yeganova; Won Kim 003; Sun Kim; W. John Wilbur (Bioinform., 2014)

Author name disambiguation for PubMed. - Wanli Liu; Rezarta Islamaj Dogan; Sun Kim; Donald C. Comeau; Won Kim 003; Lana Yeganova; Zhiyong Lu; W. John Wilbur (J. Assoc. Inf. Sci. Technol., 2014)

Summarizing Topical Contents from PubMed Documents Using a Thematic Analysis. - Sun Kim; Lana Yeganova; W. John Wilbur (EMNLP, 2015)

Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach. - Sun Kim; Haibin Liu; Lana Yeganova; W. John Wilbur (J. Biomed. Informatics, 2015)

PubTermVariants: biomedical term variants and their use for PubMed search. - Lana Yeganova; Won Kim 003; Sun Kim; Rezarta Islamaj Dogan; Wanli Liu; Donald C. Comeau; Zhiyong Lu; W. John Wilbur (BioNLP@ACL, 2016)

Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms. - Sun Kim; Lana Yeganova; W. John Wilbur (Bioinform., 2016)

MeSH-based dataset for measuring the relevance of text retrieval. - Won Kim 003; Lana Yeganova; Donald C. Comeau; W. John Wilbur; Zhiyong Lu (BioNLP, 2018)

SingleCite: Towards an improved Single Citation Search in PubMed. - Lana Yeganova; Donald C. Comeau; Won Kim 003; W. John Wilbur; Zhiyong Lu (BioNLP, 2018)

A Field Sensor: computing the composition and intent of PubMed queries. - Lana Yeganova; Won Kim 003; Donald C. Comeau; W. John Wilbur; Zhiyong Lu (Database J. Biol. Databases Curation, 2018)

Discovering themes in biomedical literature using a projection-based algorithm. - Lana Yeganova; Sun Kim; Grigory Balasanov; W. John Wilbur (BMC Bioinform., 2018)

PDC - a probabilistic distributional clustering algorithm: a case study on suicide articles in PubMed. - Rezarta Islamaj Dogan; Lana Yeganova; Won Kim 003; Natalie Xie; W. John Wilbur (CoRR, 2019)

Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages. - Rachel Bawden; Giorgio Maria Di Nunzio; Cristian Grozea; Inigo Jauregi Unanue; Antonio Jimeno-Yepes; Nancy Mah; David Martínez 001; Aurélie Névéol; Mariana L. Neves; Maite Oronoz; Olatz Perez-de-Viñaspre; Massimo Piccardi; et al. (WMT@EMNLP, 2020)

Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view. - Lana Yeganova; Rezarta Islamaj Dogan; Qingyu Chen 001; Robert Leaman; Alexis Allot; Chih-Hsuan Wei; Donald C. Comeau; Won Kim 003; Yifan Peng 002; W. John Wilbur; Zhiyong Lu (CoRR, 2020)

Better synonyms for enriching biomedical search. - Lana Yeganova; Sun Kim; Qingyu Chen 001; Grigory Balasanov; W. John Wilbur; Zhiyong Lu (J. Am. Medical Informatics Assoc., 2020)

Improving PubMed Retrieval by Integrating Abstract and Full Text Search. - Lana Yeganova; Won Kim 003; Donald C. Comeau; W. John Wilbur; Zhiyong Lu (AMIA, 2021)

Measuring the relative importance of full text sections for information retrieval from scientific literature. - Lana Yeganova; Won Kim 003; Donald C. Comeau; W. John Wilbur; Zhiyong Lu (BioNLP@NAACL-HLT, 2021)

Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set. - Lana Yeganova; Dina Wiemann; Mariana L. Neves; Federica Vezzani; Amy Siu; Inigo Jauregi Unanue; Maite Oronoz; Nancy Mah; Aurélie Névéol; David Martínez 001; Rachel Bawden; Giorgio Maria Di Nunzio; et al. (WMT@EMNLP, 2021)

Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports. - Mariana Neves 002; Antonio Jimeno-Yepes; Amy Siu; Roland Roller; Philippe Thomas 002; Maika Vicente Navarro; Lana Yeganova; Dina Wiemann; Giorgio Maria Di Nunzio; Federica Vezzani; Christel Gérardin; Rachel Bawden; et al. (WMT, 2022)

Towards a unified search: Improving PubMed retrieval with full text. - Won Kim 003; Lana Yeganova; Donald C. Comeau; W. John Wilbur; Zhiyong Lu (J. Biomed. Informatics, 2022)

Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System. - Mariana L. Neves; Antonio Jimeno-Yepes; Aurélie Névéol; Rachel Bawden; Giorgio Maria Di Nunzio; Roland Roller; Philippe Thomas 002; Federica Vezzani; Maika Vicente Navarro; Lana Yeganova; Dina Wiemann; Cristian Grozea (WMT, 2023)

BioCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval. - Qiao Jin 001; Won Kim 003; Qingyu Chen 001; Donald C. Comeau; Lana Yeganova; W. John Wilbur; Zhiyong Lu (CoRR, 2023)

MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval. - Qiao Jin 001; Won Kim 003; Qingyu Chen 001; Donald C. Comeau; Lana Yeganova; W. John Wilbur; Zhiyong Lu (Bioinform., 2023)

Findings of the WMT 2024 Biomedical Translation Shared Task: Test Sets on Abstract Level. - Mariana L. Neves; Cristian Grozea; Philippe Thomas 002; Roland Roller; Rachel Bawden; Aurélie Névéol; Steffen Castle; Vanessa Bonato; Giorgio Maria Di Nunzio; Federica Vezzani; Maika Vicente Navarro; Lana Yeganova; et al. (WMT, 2024)

Opportunities and challenges for ChatGPT and large language models in biomedicine and health. - Shubo Tian; Qiao Jin 001; Lana Yeganova; Po-Ting Lai; Qingqing Zhu; Xiuying Chen; Yifan Yang 006; Qingyu Chen 001; Won Kim 003; Donald C. Comeau; Rezarta Islamaj; Aadit Kapoor; et al. (Briefings Bioinform., 2024)