Diffusion MRI Automated Region of Interest Analysis in Standard Atlas Space versus the Individual's Native Space. - Lanya T. Cai; Maria Baida; Jamie Wren-Jarvis; Ioanna Bourla; Pratik Mukherjee (CDMRI@MICCAI, 2021)

The Case for Optimized Edge-Centric Tractography at Scale. - Joseph Y. Moon; Pratik Mukherjee; Ravi K. Madduri; Amy J. Markowitz; Lanya T. Cai; Eva M. Palacios; Geoffrey T. Manley; Peer-Timo Bremer (Frontiers Neuroinformatics, 2022)

Generalized Diffusion MRI Denoising and Super-Resolution using Swin Transformers. - Amir Sadikov; Jamie Wren-Jarvis; Xinlei Pan; Lanya T. Cai; Pratik Mukherjee (CoRR, 2023)

MaPPeRTrac: A Massively Parallel, Portable, and Reproducible Tractography Pipeline. - Lanya T. Cai; Joseph Y. Moon; Paul B. Camacho; Aaron T. Anderson; Won Jong Chwa; Bradley P. Sutton; Amy J. Markowitz; Eva M. Palacios; Alexis A. Rodriguez; Geoffrey T. Manley; Shivsundaram Shankar; Peer-Timo Bremer; et al. (Neuroinformatics, 2024)