Scalable Processing and Communication Performance in a Multi-Media Related Context. - John Markus Bjørndalen; Otto J. Anshus; Tore Larsen; Lars Ailo Bongo; Brian Vinter (EUROMICRO, 2002)

EventSpace - Exposing and Observing Communication Behavior of Parallel Cluster Applications. - Lars Ailo Bongo; Otto J. Anshus; John Markus Bjørndalen (Euro-Par, 2003)

Experiences Parallelizing, Configuring, Monitoring and Visualizing Applications for Clusters and Multi-Clusters. - Otto J. Anshus; John Markus Bjørndalen; Lars Ailo Bongo (PARCO, 2003)

Collective Communication Performance Analysis Within the Communication System. - Lars Ailo Bongo; Otto J. Anshus; John Markus Bjørndalen (Euro-Par, 2004)

Extending Collective Operations with Application Semantics for Improving Multi-Cluster Performance. - Lars Ailo Bongo; Otto J. Anshus; John Markus Bjørndalen; Tore Larsen (ISPDC/HeteroPar, 2004)

Low Overhead High Performance Runtime Monitoring of Collective Communication. - Lars Ailo Bongo; Otto J. Anshus; John Markus Bjørndalen (ICPP, 2005)

Systems Support for Remote Visualization of Genomics Applications over Wide Area Networks. - Lars Ailo Bongo; Grant Wallace; Tore Larsen; Kai Li 001; Olga G. Troyanskaya (GCCB, 2006)

Using Overdecomposition to Overlap Communication Latencies with Computation and Take Advantage of SMT Processors. - Lars Ailo Bongo; Brian Vinter; Otto J. Anshus; Tore Larsen; John Markus Bjørndalen (ICPP Workshops, 2006)

DFS: A file system for virtualized flash storage. - William K. Josephson; Lars Ailo Bongo; Kai Li 001; David Flynn (ACM Trans. Storage, 2010)

IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks. - Aaron K. Wong; Christopher Y. Park; Casey S. Greene; Lars Ailo Bongo; Yuanfang Guan; Olga G. Troyanskaya (Nucleic Acids Res., 2012)

Transparent Incremental Updates for Genomics Data Analysis Pipelines. - Edvard Pedersen; Nils Peder Willassen; Lars Ailo Bongo (Euro-Par Workshops, 2013)

Bulk synchronous visualization. - Lars Ailo Bongo (PMAM, 2013)

Functional Knowledge Transfer for High-accuracy Prediction of Under-studied Biological Processes. - Christopher Y. Park; Aaron K. Wong; Casey S. Greene; Jessica Rowland; Yuanfang Guan; Lars Ailo Bongo; Rebecca D. Burdine; Olga G. Troyanskaya (PLoS Comput. Biol., 2013)

Data-Intensive Computing Infrastructure Systems for Unmodified Biological Data Analysis Pipelines. - Lars Ailo Bongo; Edvard Pedersen; Martin Ernstsen (CIBB, 2014)

Mario: Interactive Tuning of Biological Analysis Pipelines Using Iterative Processing. - Martin Ernstsen; Erik Kjærner-Semb; Nils Peder Willassen; Lars Ailo Bongo (Euro-Par Workshops (1), 2014)

Kvik: Interactive exploration of genomic data from the NOWAC postgenome biobank. - Bjørn Fjukstad; Karina Standahl Olsen; Mie Jareid; Eiliv Lund; Lars Ailo Bongo (NIK, 2014)

Mr. Clean: A Tool for Tracking and Comparing the Lineage of Scientific Visualization Code. - Giacomo Tartari; Lars Tiede; Einar J. Holsbø; Kenneth Knudsen; Inge Alexander Raknes; Bjørn Fjukstad; Nicolle Mode; John Markus Bjørndalen; Eiliv Lund; Lars Ailo Bongo (VISSOFT, 2014)

MORTAL - Multiparadigm Optimizing Retargetable Transdisciplinary Abstraction Language. - Ove Kåven; Lars Ailo Bongo (NIK, 2015)

Integrating Data-Intensive Computing Systems with Biological Data Analysis Frameworks. - Edvard Pedersen; Inge Alexander Raknes; Martin Ernstsen; Lars Ailo Bongo (PDP, 2015)

Kvik: three-tier data exploration tools for flexible analysis of genomic data in epidemiological studies. - Bjørn Fjukstad; Karina Standahl Olsen; Mie Jareid; Eiliv Lund; Lars Ailo Bongo (F1000Research, 2015)

Applications for ultrascale computing. - Milan Mihajlovic; Lars Ailo Bongo; Raimondas Ciegis; Neki Frasheri; Dragi Kimovski; Peter G. Kropf; Svetozar Margenov; Maya G. Neytcheva; Thomas Rauber; Gudula Rünger; Roman Trobec; Roel Wuyts; et al. (Supercomput. Front. Innov., 2015)

META-pipe - Pipeline Annotation, Analysis and Visualization of Marine Metagenomic Sequence Data. - Espen Mikal Robertsen; Tim Kahlke; Inge Alexander Raknes; Edvard Pedersen; Erik Kjærner-Semb; Martin Ernstsen; Lars Ailo Bongo; Nils Peder Willassen (CoRR, 2016)

Big Biological Data Management. - Edvard Pedersen; Lars Ailo Bongo (Resource Management for Big Data Platforms, 2016)

Building Applications for Interactive Data Exploration in Systems Biology. - Bjørn Fjukstad; Vanessa Dumeaux; Karina Standahl Olsen; Eiliv Lund; Michael T. Hallett; Lars Ailo Bongo (BCB, 2017)

nsroot: Minimalist process isolation tool implemented with Linux namespaces. - Inge Alexander Raknes; Bjørn Fjukstad; Lars Ailo Bongo (NIK, 2017)

Machine Learning Based Crackle Detection in Lung Sounds. - Morten Grønnesby; Juan Carlos Aviles Solis; Einar J. Holsbø; Hasse Melbye; Lars Ailo Bongo (CoRR, 2017)

A Review of Scalable Bioinformatics Pipelines. - Bjørn Fjukstad; Lars Ailo Bongo (Data Sci. Eng., 2017)

META-pipe cloud setup and execution. - Aleksandr Agafonov; Kimmo Mattila; Cuong Duong Tuan; Lars Tiede; Inge Alexander Raknes; Lars Ailo Bongo (F1000Research, 2017)

ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services. - Espen Mikal Robertsen; Hubert Denise; Alex L. Mitchell; Robert D. Finn; Lars Ailo Bongo; Nils Peder Willassen (F1000Research, 2017)

Large-scale biological meta-database management. - Edvard Pedersen; Lars Ailo Bongo (Future Gener. Comput. Syst., 2017)

Interactions between the tumor and the blood systemic response of breast cancer patients. - Vanessa Dumeaux; Bjørn Fjukstad; Hans E. Fjosne; Jan-Ole Frantzen; Marit Muri Holmen; Enno Rodegerdts; Ellen Schlichting; Anne-Lise Børresen-Dale; Lars Ailo Bongo; Eiliv Lund; Michael T. Hallett (PLoS Comput. Biol., 2017)

Low-Cost Programmable Air Quality Sensor Kits in Science Education. - Bjørn Fjukstad; Nina Angelvik; Maria Wulff Hauglann; Joachim Sveia Knutsen; Morten Grønnesby; Hedinn Gunhildrud; Lars Ailo Bongo (SIGCSE, 2018)

Replication study: Development and validation of deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. - Mike Voets; Kajsa Møllersen; Lars Ailo Bongo (CoRR, 2018)

META-pipe Authorization service. - Inge Alexander Raknes; Lars Ailo Bongo (F1000Research, 2018)

Norwegian e-Infrastructure for Life Sciences (NeLS). - Kidane M. Tekle; Sveinung Gundersen; Kjetil Klepper; Lars Ailo Bongo; Inge Alexander Raknes; Xiaxi Li; Wei Zhang; Christian Andreetta; Teshome Dagne Mulugeta; Matús Kalas; Morten B. Rye; Erik Hjerde; et al. (F1000Research, 2018)

Teaching Electronics and Programming in Norwegian Schools Using the air: bit Sensor Kit. - Bjørn Fjukstad; Nina Angelvik; Morten Grønnesby; Maria Wulff Hauglann; Hedinn Gunhildrud; Fredrik Høisæther Rasch; Julianne Iversen; Margaret Dalseng; Lars Ailo Bongo (ITiCSE, 2019)

Reproducible Data Analysis Pipelines for Precision Medicine. - Bjørn Fjukstad; Vanessa Dumeaux; Michael T. Hallett; Lars Ailo Bongo (PDP, 2019)

Convolutional Neural Network for Breathing Phase Detection in Lung Sounds. - Cristina Jácome; Johan Ravn; Einar J. Holsbø; Juan Carlos Aviles Solis; Hasse Melbye; Lars Ailo Bongo (Sensors, 2019)

Interactive exploration of population scale pharmacoepidemiology datasets. - Tengel Ekrem Skar; Einar J. Holsbø; Kristian Svendsen; Lars Ailo Bongo (CoRR, 2020)

Occode: an end-to-end machine learning pipeline for transcription of historical population censuses. - Bjørn-Richard Pedersen; Einar J. Holsbø; Trygve Andersen; Nikita Shvetsov; Johan Ravn; Hilde Leikny Sommerseth; Lars Ailo Bongo (CoRR, 2021)

GeneNet VR: Interactive visualization of large-scale biological networks using a standalone headset. - Álvaro Martínez Fernández; Lars Ailo Bongo; Edvard Pedersen (CoRR, 2021)

Phonocardiogram Classification Using 1-Dimensional Inception Time Convolutional Neural Networks. - Bjørn-Jostein Singstad; Antony M. Gitau; Markus Kreutzer Johnsen; Johan Ravn; Lars Ailo Bongo; Henrik Schirmer (CinC, 2022)

A Pragmatic Machine Learning Approach to Quantify Tumor Infiltrating Lymphocytes in Whole Slide Images. - Nikita Shvetsov; Morten Grønnesby; Edvard Pedersen; Kajsa Møllersen; Lill-Tove Rasmussen Busund; Ruth Schwienbacher; Lars Ailo Bongo; Thomas K. Kilvaer (CoRR, 2022)

Social network analysis of Staphylococcus aureus carriage in a general youth population. - Dina Benedicte Stensen; Rafael Adolfo Nozal Cañadas; Lars Småbrekke; Karina Standahl Olsen; Christopher Sivert Nielsen; Kristian Svendsen; Anne Merethe Hanssen; Johanna Sollid; Gunnar Skov Simonsen; Lars Ailo Bongo; Anne-Sofie Furberg (CoRR, 2022)

Coding Historical Causes of Death Data with Large Language Models. - Bjørn-Richard Pedersen; Maisha Islam; Doris Tove Kristoffersen; Lars Ailo Bongo; Eilidh Garrett; Alice Reid; Hilde L. Sommerseth (AISoLA (Selected Papers), 2023)

Publicly available datasets of breast histopathology H&E whole-slide images: A systematic review. - Masoud Tafavvoghi; Lars Ailo Bongo; Nikita Shvetsov; Lill-Tove Rasmussen Busund; Kajsa Møllersen (CoRR, 2023)

More efficient manual review of automatically transcribed tabular data. - Bjørn-Richard Pedersen; Rigmor Katrine Johansen; Einar J. Holsbø; Hilde L. Sommerseth; Lars Ailo Bongo (CoRR, 2023)

Interoperable synthetic health data with SyntHIR to enable the development of CDSS tools. - Pavitra Chauhan; Mohsen Gamal Saad Askar; Bjørn Fjukstad; Lars Ailo Bongo; Edvard Pedersen (CoRR, 2023)

Interactive Storytelling for Communities, Heritage and Public Engagement. - Siiri Paananen; Karin B. Johansson; Lars Ailo Bongo; Clara Sayffaerth; Eleftherios Papachristos; Mari Suoheimo; Mikael Wiberg; Jonna Häkkilä (NordiCHI (Adjunct), 2024)

Fast TILs estimation in lung cancer WSIs based on semi-stochastic patch sampling. - Nikita Shvetsov; Anders Sildnes; Lill-Tove Rasmussen Busund; Stig Dalen; Kajsa Møllersen; Lars Ailo Bongo; Thomas K. Kilvaer (CoRR, 2024)

Deep learning-based classification of breast cancer molecular subtypes from H&E whole-slide images. - Masoud Tafavvoghi; Anders Sildnes; Mehrdad Rakaee; Nikita Shvetsov; Lars Ailo Bongo; Lill-Tove Rasmussen Busund; Kajsa Møllersen (CoRR, 2024)

Prompt Engineering a Schizophrenia Chatbot: Utilizing a Multi-Agent Approach for Enhanced Compliance with Prompt Instructions. - Per Niklas Waaler; Musarrat Hussain; Igor Molchanov; Lars Ailo Bongo; Brita Elvevåg (CoRR, 2024)

A Lightweight and Extensible Cell Segmentation and Classification Model for Whole Slide Images. - Nikita Shvetsov; Thomas K. Kilvaer; Masoud Tafavvoghi; Anders Sildnes; Kajsa Møllersen; Lill-Tove Rasmussen Busund; Lars Ailo Bongo (CoRR, 2025)

Open-source framework for detecting bias and overfitting for large pathology images. - Anders Sildnes; Nikita Shvetsov; Masoud Tafavvoghi; Vi Ngoc-Nha Tran; Kajsa Møllersen; Lill-Tove Rasmussen Busund; Thomas K. Kilvaer; Lars Ailo Bongo (CoRR, 2025)

Automating tumor-infiltrating lymphocyte assessment in breast cancer histopathology images using QuPath: a transparent and accessible machine learning pipeline. - Masoud Tafavvoghi; Lars Ailo Bongo; André Berli Delgado; Nikita Shvetsov; Anders Sildnes; Line Moi; Lill-Tove Rasmussen Busund; Kajsa Møllersen (CoRR, 2025)