3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine. - Ross McGuire; Stefan Verhoeven; Márton Vass; Gerrit Vriend; Iwan J. P. de Esch; Scott J. Lusher; Rob Leurs; Lars Ridder; Albert J. Kooistra; Tina Ritschel; Chris de Graaf (J. Chem. Inf. Model., 2017)

Towards FAIR protocols and workflows: The OpenPREDICT case study. - Remzi Celebi; Joao Rebelo Moreira; Ahmed A. Hassan; Sandeep Ayyar; Lars Ridder; Tobias Kuhn; Michel Dumontier (CoRR, 2019)

QMflows: A Tool Kit for Interoperable Parallel Workflows in Quantum Chemistry. - Felipe Zapata 003; Lars Ridder; Johan Hidding; Christoph R. Jacob; Ivan Infante; Lucas Visscher (J. Chem. Inf. Model., 2019)

Towards FAIR protocols and workflows: the OpenPREDICT use case. - Remzi Celebi; Joao Rebelo Moreira; Ahmed A. Hassan; Sandeep Ayyar; Lars Ridder; Tobias Kuhn; Michel Dumontier (PeerJ Comput. Sci., 2020)

User-friendly Composition of FAIR Workflows in a Notebook Environment. - Robin A. Richardson; Remzi Celebi; Sven van der Burg; Djura Smits; Lars Ridder; Michel Dumontier; Tobias Kuhn (K-CAP, 2021)

MS2DeepScore: a novel deep learning similarity measure to compare tandem mass spectra. - Florian Huber; Sven van der Burg; Justin J. J. van der Hooft; Lars Ridder (J. Cheminformatics, 2021)

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. - Florian Huber; Lars Ridder; Stefan Verhoeven; Jurriaan H. Spaaks; Faruk Diblen; Simon Rogers; Justin J. J. van der Hooft (PLoS Comput. Biol., 2021)

Reusable virtual coach for smoking cessation and physical activity coaching. - Walter Baccinelli; Sven van der Burg; Robin A. Richardson; Djura Smits; Cunliang Geng; Lars Ridder; Bouke L. Scheltinga; Nele Albers; Willem-Paul Brinkman; Eline Meijer; Jasper Reenalda (IVA, 2022)