Massively Parallelized DNA Motif Search on the Reconfigurable Hardware Platform COPACOBANA. - Jan Schröder; Lars Wienbrandt; Gerd Pfeiffer; Manfred Schimmler (PRIB, 2008)

Collecting Statistical Information in DNA Sequences for the Detection of Special Motifs. - Lars Wienbrandt; Manfred Schimmler (BIOCOMP, 2010)

Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics. - Lars Wienbrandt; Stefan Baumgart; Jost Bissel; Carol May Yen Yeo; Manfred Schimmler (ICCS, 2010)

Massively parallel FPGA-based implementation of BLASTp with the two-hit method. - Lars Wienbrandt; Stefan Baumgart; Jost Bissel; Florian Schatz; Manfred Schimmler (ICCS, 2011)

Dictionary Attack on TrueCrypt with RIVYERA S3-5000. - Ayman Abbas; Claas Anders Rathje; Lars Wienbrandt; Manfred Schimmler (ICPADS, 2012)

Improvement of BLASTp on the FPGA-Based High-Performance Computer RIVYERA. - Lars Wienbrandt; Daniel Siebert; Manfred Schimmler (ISBRA, 2012)

Optimizing Investment Strategies with the Reconfigurable Hardware Platform RIVYERA. - Christoph Starke 001; Vasco Grossmann; Lars Wienbrandt; Sven Koschnicke; John Carstens; Manfred Schimmler (Int. J. Reconfigurable Comput., 2012)

An FPGA Implementation of an Investment Strategy Processor. - Christoph Starke 001; Vasco Grossmann; Lars Wienbrandt; Manfred Schimmler (ICCS, 2012)

The FPGA-Based High-Performance Computer RIVYERA for Applications in Bioinformatics. - Lars Wienbrandt (CiE, 2014)

UPC++ for bioinformatics: A case study using genome-wide association studies. - Jan Christian Kässens; Jorge González-Domínguez; Lars Wienbrandt; Bertil Schmidt (CLUSTER, 2014)

Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS. - Jorge González-Domínguez; Bertil Schmidt; Jan Christian Kässens; Lars Wienbrandt (Euro-Par, 2014)

FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS. - Lars Wienbrandt; Jan Christian Kässens; Jorge González-Domínguez; Bertil Schmidt; David Ellinghaus; Manfred Schimmler (ICCS, 2014)

An efficient implementation of PBKDF2 with RIPEMD-160 on multiple FPGAs. - Ayman Abbas; Rian Voss; Lars Wienbrandt; Manfred Schimmler (ICPADS, 2014)

Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model. - Jorge González-Domínguez; Jan Christian Kässens; Lars Wienbrandt; Bertil Schmidt (Int. J. High Perform. Comput. Appl., 2015)

High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs. - Jan Christian Kässens; Lars Wienbrandt; Jorge González-Domínguez; Bertil Schmidt; Manfred Schimmler (J. Comput. Sci., 2015)

Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems. - Jorge González-Domínguez; Lars Wienbrandt; Jan Christian Kässens; David Ellinghaus; Manfred Schimmler; Bertil Schmidt (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS. - Jan Christian Kässens; Lars Wienbrandt; Manfred Schimmler; Jorge González-Domínguez; Bertil Schmidt (ASAP, 2016)

Genome-Wide Association Interaction Studies with MB-MDR and maxT multiple testing correction on FPGAs. - Sven Gundlach; Jan Christian Kässens; Lars Wienbrandt (ICCS, 2016)

FPGAs in Bioinformatics - Implementation and Evaluation of Common Bioinformatics Algorithms in Reconfigurable Logic. - Lars Wienbrandt (2016)

Fast Genome-Wide Third-order SNP Interaction Tests with Information Gain on a Low-cost Heterogeneous Parallel FPGA-GPU Computing Architecture. - Lars Wienbrandt; Jan Christian Kässens; Matthias Hübenthal; David Ellinghaus (ICCS, 2017)

1, 000x Faster Than PLINK: Genome-Wide Epistasis Detection with Logistic Regression Using Combined FPGA and GPU Accelerators. - Lars Wienbrandt; Jan Christian Kässens; Matthias Hübenthal; David Ellinghaus (ICCS (2), 2018)

1000× faster than PLINK: Combined FPGA and GPU accelerators for logistic regression-based detection of epistasis. - Lars Wienbrandt; Jan Christian Kässens; Matthias Hübenthal; David Ellinghaus (J. Comput. Sci., 2019)

Reference-Based Haplotype Phasing with FPGAs. - Lars Wienbrandt; Jan Christian Kässens; David Ellinghaus (ICCS (3), 2020)

Network Aggregation to Enhance Results Derived from Multiple Analytics. - Diane Duroux; Héctor Climente-González; Lars Wienbrandt; Kristel Van Steen (AIAI (1), 2020)

EagleImp: fast and accurate genome-wide phasing and imputation in a single tool. - Lars Wienbrandt; David Ellinghaus (Bioinform., 2022)

Logistic Regression with Covariate Clustering in Genome-Wide Association Interaction Studies. - Volker Neff; Lars Wienbrandt; David Ellinghaus (ICCS (Workshops 1), 2025)