Subfields of the hippocampal formation at 7 T MRI: In vivo volumetric assessment. - Laura E. M. Wisse; L. Gerritsen; Jaco J. M. Zwanenburg; Hugo J. Kuijf; Peter R. Luijten; Geert Jan Biessels; Mirjam I. Geerlings (NeuroImage, 2012)

A framework for informing segmentation of in vivo MRI with information derived from ex vivo imaging: Application in the medial temporal lobe. - Paul A. Yushkevich; Laura E. M. Wisse; Daniel H. Adler; Ranjit Ittyerah; John Pluta; John L. Robinson; Theresa Schuck; John Q. Trojanowski; Murray Grossman; John A. Detre; Mark A. Elliott; Jon B. Toledo; et al. (EMBC, 2016)

Accounting for the Confound of Meninges in Segmenting Entorhinal and Perirhinal Cortices in T1-Weighted MRI. - Long Xie; Laura E. M. Wisse; Sandhitsu R. Das; Hongzhi Wang 002; David A. Wolk; José V. Manjón; Paul A. Yushkevich (MICCAI (2), 2016)

Erratum to "Subfields of the hippocampal formation at 7T MRI: In vivo volumetric assessment" [NeuroImage 61 (2012) 1043-1049]. - Laura E. M. Wisse; L. Gerritsen; Jaco J. M. Zwanenburg; Hugo J. Kuijf; Peter R. Luijten; Geert Jan Biessels; Mirjam I. Geerlings (NeuroImage, 2016)

Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability. - Long Xie; John Pluta; Sandhitsu R. Das; Laura E. M. Wisse; Hongzhi Wang 002; Lauren Mancuso; Dasha Kliot; Brian B. Avants; Song-Lin Ding; José V. Manjón; David A. Wolk; Paul A. Yushkevich (NeuroImage, 2017)

Characterizing Anatomical Variability and Alzheimer's Disease Related Cortical Thinning in the Medial Temporal Lobe Using Graph-Based Groupwise Registration and Point Set Geodesic Shooting. - Long Xie; Laura E. M. Wisse; Sandhitsu R. Das; Ranjit Ittyerah; Jiancong Wang; David A. Wolk; Paul A. Yushkevich (ShapeMI@MICCAI, 2018)

Characterizing the human hippocampus in aging and Alzheimer's disease using a computational atlas derived from ex vivo MRI and histology. - Daniel H. Adler; Laura E. M. Wisse; Ranjit Ittyerah; John Pluta; Song-Lin Ding; Long Xie; Jiancong Wang; Salmon Kadivar; John L. Robinson; Theresa Schuck; John Q. Trojanowski; Murray Grossman; et al. (Proc. Natl. Acad. Sci. USA, 2018)

Facilitating Manual Segmentation of 3D Datasets Using Contour And Intensity Guided Interpolation. - Sadhana Ravikumar; Laura E. M. Wisse; Yang Gao 031; Guido Gerig; Paul A. Yushkevich (ISBI, 2019)

Building an Ex Vivo Atlas of the Earliest Brain Regions Affected by Alzheimer's Disease Pathology. - Sadhana Ravikumar; Laura E. M. Wisse; Ranjit Ittyerah; Sydney Lim; Madigan Lavery; Long Xie; John L. Robinson; Theresa Schuck; Murray Grossman; Edward B. Lee; M. Dylan Tisdall; Karthik Prabhakaran; et al. (ISBI, 2020)

3D Mapping of TAU Neurofibrillary Tangle Pathology in the Human Medial Temporal Lobe. - Paul A. Yushkevich; Maria Mercedes Iñiguez de Onzoño Martin; Ranjit Ittyerah; Sydney Lim; Madigan Lavery; Jiancong Wang; Alex Ling Yu Hung; Nicolas Vergnet; Sadhana Ravikumar; Long Xie; Mengjin Dong; Robin DeFlores; et al. (ISBI, 2020)

DeepAtrophy: Teaching a Neural Network to Differentiate Progressive Changes from Noise on Longitudinal MRI in Alzheimer's Disease. - Mengjin Dong; Long Xie; Sandhitsu R. Das; Jiancong Wang; Laura E. M. Wisse; Robin DeFlores; David A. Wolk; Paul A. Yushkevich (CoRR, 2020)

Deep Label Fusion: A 3D End-To-End Hybrid Multi-atlas Segmentation and Deep Learning Pipeline. - Long Xie; Laura E. M. Wisse; Jiancong Wang; Sadhana Ravikumar; Trevor Glenn; Anica Luther; Sydney Lim; David A. Wolk; Paul A. Yushkevich (IPMI, 2021)

Unfolding the Medial Temporal Lobe Cortex to Characterize Neurodegeneration Due to Alzheimer's Disease Pathology Using Ex vivo Imaging. - Sadhana Ravikumar; Laura E. M. Wisse; Sydney Lim; David J. Irwin; Ranjit Ittyerah; Long Xie; Sandhitsu R. Das; Edward B. Lee; M. Dylan Tisdall; Karthik Prabhakaran; John A. Detre; Gabor Mizsei; et al. (MLCN@MICCAI, 2021)

Gray Matter Segmentation in Ultra High Resolution 7 Tesla ex vivo T2w MRI of Human Brain Hemispheres. - Pulkit Khandelwal; Shokufeh Sadaghiani; Sadhana Ravikumar; Sydney Lim; Sanaz Arezoumandan; Claire Peterson; Eunice Chung; Madigan L. Bedard; Noah Capp; Ranjit Ittyerah; Elyse Migdal; Grace Choi; et al. (CoRR, 2021)

DeepAtrophy: Teaching a neural network to detect progressive changes in longitudinal MRI of the hippocampal region in Alzheimer's disease. - Mengjin Dong; Long Xie; Sandhitsu R. Das; Jiancong Wang; Laura E. M. Wisse; Robin DeFlores; David A. Wolk; Paul A. Yushkevich (NeuroImage, 2021)

Improved Segmentation of Deep Sulci in Cortical Gray Matter Using a Deep Learning Framework Incorporating Laplace's Equation. - Sadhana Ravikumar; Ranjit Ittyerah; Sydney Lim; Long Xie; Sandhitsu R. Das; Pulkit Khandelwal; Laura E. M. Wisse; Madigan L. Bedard; John L. Robinson; Terry Schuck; Murray Grossman; John Q. Trojanowski; et al. (IPMI, 2023)

Integrating color deconvolution thresholding and weakly supervised learning for automated segmentation of neurofibrillary tangle and neuropil threads. - Hyung S. Roh; David J. Irwin; Mónica Muñoz López; Maria Mercedes Iñiguez de Onzoño Martin; Ranjit Ittyerah; Sydney Lim; Madigan L. Bedard; John L. Robinson; Theresa Schuck; Emilio Artacho-Pérula; María del Mar Arroyo Jiménez; Maria del Pilar Marcos Rabal; et al. (Digital and Computational Pathology, 2023)

Automated deep learning segmentation of high-resolution 7 T ex vivo MRI for quantitative analysis of structure-pathology correlations in neurodegenerative diseases. - Pulkit Khandelwal; Michael Tran Duong; Shokufeh Sadaghiani; Sydney Lim; Amanda Denning; Eunice Chung; Sadhana Ravikumar; Sanaz Arezoumandan; Claire Peterson; Madigan L. Bedard; Noah Capp; Ranjit Ittyerah; et al. (CoRR, 2023)

Regional Deep Atrophy: a Self-Supervised Learning Method to Automatically Identify Regions Associated With Alzheimer's Disease Progression From Longitudinal MRI. - Mengjin Dong; Long Xie; Sandhitsu R. Das; Jiancong Wang; Laura E. M. Wisse; Robin DeFlores; David A. Wolk; Paul A. Yushkevich (CoRR, 2023)

Deep label fusion: A generalizable hybrid multi-atlas and deep convolutional neural network for medical image segmentation. - Long Xie; Laura E. M. Wisse; Jiancong Wang; Sadhana Ravikumar; Pulkit Khandelwal; Trevor Glenn; Anica Luther; Sydney Lim; David A. Wolk; Paul A. Yushkevich (Medical Image Anal., 2023)

Nearly isotropic segmentation for medial temporal lobe subregions in multi-modality MRI. - Yue Li; Pulkit Khandelwal; Long Xie; Laura E. M. Wisse; Nidhi Mundada; Christopher A. Brown; Emily McGrew; Amanda Denning; Sandhitsu R. Das; David A. Wolk; Paul A. Yushkevich (CoRR, 2025)

Converting T1-weighted MRI from 3T to 7T quality using deep learning. - Malo Gicquel; Ruoyi Zhao; Anika Wuestefeld; Nicola Spotorno; Olof Strandberg; Kalle Åström; Yu Xiao; Laura E. M. Wisse; Danielle van Westen; Rik Ossenkoppele; Niklas Mattsson-Carlgren; David Berron; et al. (CoRR, 2025)