Improving missing value estimation in microarray data with gene ontology. - Johannes Tuikkala; Laura Elo; Olli Nevalainen; Tero Aittokallio (Bioinform., 2006)

Inference of Gene Coexpression Networks by Integrative Analysis across Microarray Experiments. - Laura Elo; Riitta Lahesmaa; Tero Aittokallio (J. Integr. Bioinform., 2006)

Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process. - Laura Elo; Henna Järvenpää; Matej Oresic; Riitta Lahesmaa; Tero Aittokallio (Bioinform., 2007)

Missing value imputation improves clustering and interpretation of gene expression microarray data. - Johannes Tuikkala; Laura Elo; Olli Nevalainen; Tero Aittokallio (BMC Bioinform., 2008)

Reproducibility-Optimized Test Statistic for Ranking Genes in Microarray Studies. - Laura Elo; Sanna Filen; Riitta Lahesmaa; Tero Aittokallio (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets. - Laura Elo; Jukka Hiissa; Jarno Tuimala; Aleksi Kallio; Eija Korpelainen; Tero Aittokallio (Briefings Bioinform., 2009)

Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays. - Leo Lahti; Laura Elo; Tero Aittokallio; Samuel Kaski (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Fully scalable online-preprocessing algorithm for short oligonucleotide microarray atlases - Leo Lahti; Aurora Torrente; Laura Elo; Alvis Brazma; Johan Rung (CoRR, 2012)

Mining proteomic data for biomedical research. - Laura Elo; Benno Schwikowski (WIREs Data Mining Knowl. Discov., 2012)

Comparison of software packages for detecting differential expression in RNA-seq studies. - Fatemeh Seyednasrollah; Asta Laiho; Laura L. Elo (Briefings Bioinform., 2015)

Empirical comparison of structure-based pathway methods. - Maria K. Jaakkola; Laura L. Elo (Briefings Bioinform., 2016)

A predictive model of overall survival in patients with metastatic castration-resistant prostate cancer. - Mehrad Mahmoudian; Fatemeh Seyednasrollah; Liisa Koivu; Outi Hirvonen; Sirkku Jyrkkiö; Laura L. Elo (F1000Research, 2016)

Comparison of methods to detect differentially expressed genes between single-cell populations. - Maria K. Jaakkola; Fatemeh Seyednasrollah; Arfa Mehmood; Laura L. Elo (Briefings Bioinform., 2017)

ROTS: An R package for reproducibility-optimized statistical testing. - Tomi Suomi; Fatemeh Seyednasrollah; Maria K. Jaakkola; Thomas Faux; Laura L. Elo (PLoS Comput. Biol., 2017)

A systematic evaluation of normalization methods in quantitative label-free proteomics. - Tommi Välikangas; Tomi Suomi; Laura L. Elo (Briefings Bioinform., 2018)

A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation. - Tommi Välikangas; Tomi Suomi; Laura L. Elo (Briefings Bioinform., 2018)

Phosphonormalizer: an R package for normalization of MS-based label-free phosphoproteomics. - Sohrab Saraei; Tomi Suomi; Otto Kauko; Laura L. Elo (Bioinform., 2018)

SimPhospho: a software tool enabling confident phosphosite assignment. - Veronika Suni; Tomi Suomi; Tomoya Tsubosaka; Susumu Y. Imanishi; Laura L. Elo; Garry L. Corthals (Bioinform., 2018)

Systematic evaluation of differential splicing tools for RNA-seq studies. - Arfa Mehmood; Asta Laiho; Mikko S. Venäläinen; Aidan J. McGlinchey; Ning Wang 032; Laura L. Elo (Briefings Bioinform., 2020)

Stable Iterative Variable Selection. - Mehrad Mahmoudian; Mikko S. Venäläinen; Riku Klén; Laura L. Elo (Bioinform., 2021)

ILoReg: a tool for high-resolution cell population identification from single-cell RNA-seq data. - Johannes Smolander; Sini Junttila; Mikko S. Venäläinen; Laura L. Elo (Bioinform., 2021)

Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge. - Solveig K. Sieberts; Jennifer Schaff; Marlena Duda; Bálint Á Pataki; Ming Sun; Phil Snyder; Jean-Francois Daneault; Federico Parisi; Gianluca Costante; Udi Rubin; Peter Banda; Yooree Chae; et al. (npj Digit. Medicine, 2021)

PhosPiR: an automated phosphoproteomic pipeline in R. - Ye Hong; Dani Flinkman; Tomi Suomi; Sami Pietilä; Peter James; Eleanor Coffey; Laura L. Elo (Briefings Bioinform., 2022)

Correction to: PhosPiR: an automated phosphoproteomic pipeline in R. - Ye Hong; Dani Flinkman; Tomi Suomi; Sami Pietilä; Peter James; Eleanor Coffey; Laura L. Elo (Briefings Bioinform., 2022)

Estimating cell type-specific differential expression using deconvolution. - Maria K. Jaakkola; Laura L. Elo (Briefings Bioinform., 2022)

Benchmarking methods for detecting differential states between conditions from multi-subject single-cell RNA-seq data. - Sini Junttila; Johannes Smolander; Laura L. Elo (Briefings Bioinform., 2022)

scShaper: an ensemble method for fast and accurate linear trajectory inference from single-cell RNA-seq data. - Johannes Smolander; Sini Junttila; Mikko S. Venäläinen; Laura L. Elo (Bioinform., 2022)

Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data. - Ning Wang 032; Vladislav Lysenkov; Katri Orte; Veli Kairisto; Juhani Aakko; Sofia Khan; Laura L. Elo (PLoS Comput. Biol., 2022)

VarSCAT: A computational tool for sequence context annotations of genomic variants. - Ning Wang 032; Sofia Khan; Laura L. Elo (PLoS Comput. Biol., 2023)

Cell-connectivity-guided trajectory inference from single-cell data. - Johannes Smolander; Sini Junttila; Laura L. Elo (Bioinform., 2023)

ECCB2024: The 23rd European Conference on Computational Biology. - Anu Kukkonen-Macchi; Sampsa Hautaniemi; Katharina F. Heil; Merja Heinäniemi; Lars Juhl Jensen; Sini Junttila; Lukas Käll; Asta Laiho; Peter Maccallum; Matti Nykter; Bengt Persson; Tomi Suomi; et al. (Bioinform., 2024)

Adaptive sequence alignment for metagenomic data analysis. - Sami Pietilä; Tomi Suomi; Niklas Paulin; Asta Laiho; Yannes S. Sclivagnotis; Laura L. Elo (Comput. Biol. Medicine, 2025)