OSIRIS: a tool for retrieving literature about sequence variants. - Julio Bonis; Laura Inés Furlong; Ferran Sanz (Bioinform., 2006)

Identifying gene-Specific Variations in Biomedical Text. - Roman Klinger; Christoph M. Friedrich; Heinz-Theodor Mevissen; Juliane Fluck; Martin Hofmann-Apitius; Laura Inés Furlong; Ferran Sanz (J. Bioinform. Comput. Biol., 2007)

OSIRISv1.2: A named entity recognition system for sequence variants of genes in biomedical literature. - Laura Inés Furlong; Holger Dach; Martin Hofmann-Apitius; Ferran Sanz (BMC Bioinform., 2008)

Identification of Sequence Variants of Genes from Biomedical Literature. - Laura I. Furlong; Ferran Sanz (Information Retrieval in Biomedicine, 2009)

From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways. - Anna Bauer-Mehren; Laura Inés Furlong; Michael Rautschka; Ferran Sanz (BMC Bioinform., 2009)

Digging for knowledge with information extraction: a case study on human gene-disease associations. - Markus Bundschus; Anna Bauer-Mehren; Volker Tresp; Laura Inés Furlong; Hans-Peter Kriegel (CIKM, 2010)

DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks. - Anna Bauer-Mehren; Michael Rautschka; Ferran Sanz; Laura Inés Furlong (Bioinform., 2010)

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. - Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Chen Li 011; Senay Kafkas; Ian Lewin; Ning Kang 002; Peter T. Corbett; David Milward; Ekaterina Buyko; Elena Beisswanger; Kerstin Hornbostel; Alexandre Kouznetsov; et al. (J. Biomed. Semant., 2011)

Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers. - Philippe E. Thomas; Roman Klinger; Laura Inés Furlong; Martin Hofmann-Apitius; Christoph M. Friedrich (BMC Bioinform., 2011)

DisGeNET: from MySQL to Nanopublication, Modelling Gene-Disease Associations for the Semantic Web. - Núria Queralt-Rosinach; Laura Inés Furlong (SWAT4LS, 2012)

The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships. - Erik M. van Mulligen; Annie Fourrier-Réglat; David Gurwitz; Mariam Molokhia; Ainhoa Nieto; Gianluca Trifirò; Jan A. Kors; Laura Inés Furlong (J. Biomed. Informatics, 2012)

Automatic Filtering and Substantiation of Drug Safety Signals. - Anna Bauer-Mehren; Erik M. van Mulligen; Paul Avillach; María del Carmen Carrascosa; Ricard García-Serna; Janet Piñero González; Bharat Singh; Pedro Lopes 002; José Luís Oliveira; Gayo Diallo; Ernst Ahlberg Helgee; Scott Boyer; et al. (PLoS Comput. Biol., 2012)

DisGeNET RDF: A Gene-Disease Association Linked Open Data Resource. - Núria Queralt-Rosinach; Laura Inés Furlong (SWAT4LS, 2013)

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. - Michel Dumontier; Christopher J. O. Baker; Joachim Baran; Alison Callahan; Leonid L. Chepelev; Jose Cruz-Toledo; Nicholas R. Del Rio; Geraint Duck; Laura Inés Furlong; Nichealla Keath; Dana Klassen; Jamie P. McCusker; et al. (J. Biomed. Semant., 2014)

Reuse of EHRs to Support Clinical Research in a Hospital of Reference. - Miguel Angel Mayer; Laura Inés Furlong; Pilar Torre; Ignasi Planas; Francesc Cots; Elisabet Izquierdo; Jordi Portabella; Javier Rovira; Alba Gutiérrez-Sacristán; Ferran Sanz (MIE, 2015)

Exposing Provenance Metadata Using Different RDF Models. - Gang Fu; Evan Bolton; Núria Queralt-Rosinach; Laura Inés Furlong; Vinh Nguyen; Amit P. Sheth; Olivier Bodenreider; Michel Dumontier (SWAT4LS, 2015)

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes. - Janet Piñero González; Núria Queralt-Rosinach; Àlex Bravo; Jordi Deu-Pons; Anna Bauer-Mehren; Martin Baron; Ferran Sanz; Laura Inés Furlong (Database J. Biol. Databases Curation, 2015)

PsyGeNET: a knowledge platform on psychiatric disorders and their genes. - Alba Gutiérrez-Sacristán; Solène Grosdidier; Olga Valverde; Marta Torrens; Àlex Bravo; Janet Piñero González; Ferran Sanz; Laura Inés Furlong (Bioinform., 2015)

Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research. - Àlex Bravo; Janet Piñero González; Núria Queralt-Rosinach; Michael Rautschka; Laura Inés Furlong (BMC Bioinform., 2015)

On Reasoning with RDF Statements about Statements using Singleton Property Triples. - Vinh Nguyen; Olivier Bodenreider; Krishnaprasad Thirunarayan; Gang Fu; Evan Bolton; Núria Queralt Rosinach; Laura Inés Furlong; Michel Dumontier; Amit P. Sheth (CoRR, 2015)

Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims. - Mélanie Courtot; Alex L. Mitchell; Maxim Scheremetjew; Janet Piñero González; Laura I. Furlong; Robert D. Finn; Helen E. Parkinson (SWAT4LS, 2016)

Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. - Àlex Bravo; Tong Shu Li; Andrew I. Su; Benjamin M. Good; Laura I. Furlong (Database J. Biol. Databases Curation, 2016)

A crowdsourcing workflow for extracting chemical-induced disease relations from free text. - Tong Shu Li; Àlex Bravo; Laura I. Furlong; Benjamin M. Good; Andrew I. Su (Database J. Biol. Databases Curation, 2016)

DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases. - Núria Queralt-Rosinach; Janet Piñero González; Àlex Bravo; Ferran Sanz; Laura I. Furlong (Bioinform., 2016)

CDH1/E-cadherin and solid tumors. An updated gene-disease association analysis using bioinformatics tools. - María Florencia Abascal; María José Besso; Marina Rosso; María Victoria Mencucci; Evangelina Aparicio; Gala Szapiro; Laura Inés Furlong; Mónica Hebe Vazquez-Levin (Comput. Biol. Chem., 2016)

Publishing DisGeNET as nanopublications. - Núria Queralt-Rosinach; Tobias Kuhn; Christine Chichester; Michel Dumontier; Ferran Sanz; Laura I. Furlong (Semantic Web, 2016)

Reliable Granular References to Changing Linked Data. - Tobias Kuhn; Egon L. Willighagen; Chris T. A. Evelo; Núria Queralt-Rosinach; Emilio Centeno; Laura I. Furlong (ISWC (1), 2017)

IBI-UPF at BARR-2017: Learning to Identify Abbreviations in Biomedical Literature System description. - Francesco Ronzano; Laura Inés Furlong (IberEval@SEPLN, 2017)

Text mining and expert curation to develop a database on psychiatric diseases and their genes. - Alba Gutiérrez-Sacristán; Àlex Bravo; Marta Portero-Tresserra; Olga Valverde; Antonio Armario; M. C. Blanco-Gandía; Adriana Farré; Lierni Fernández-Ibarrondo; Francina Fonseca; Jesús Giraldo; Angela Leis; Anna Mané; et al. (Database J. Biol. Databases Curation, 2017)

psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes. - Alba Gutiérrez-Sacristán; Carles Hernandez-Ferrer; Juan R. González; Laura Inés Furlong (Bioinform., 2017)

DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants. - Janet Piñero González; Àlex Bravo; Núria Queralt-Rosinach; Alba Gutiérrez-Sacristán; Jordi Deu-Pons; Emilio Centeno; Javier García-García 002; Ferran Sanz; Laura I. Furlong (Nucleic Acids Res., 2017)

Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. - Tobias Kuhn; Albert Meroño-Peñuela; Alexander Malic; Jorrit H. Poelen; Allen H. Hurlbert; Emilio Centeno Ortiz; Laura I. Furlong; Núria Queralt-Rosinach; Christine Chichester; Juan M. Banda; Egon L. Willighagen; Friederike Ehrhart; et al. (eScience, 2018)

IBI at TREC 2018: Precision Medicine Track. - Francesco Ronzano; Emilio Centeno; Judith Pérez-Granado; Laura I. Furlong (TREC, 2018)

Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. - Alba Gutiérrez-Sacristán; Romain Guedj; Gabor Korodi; Jason Stedman; Laura Inés Furlong; Chirag J. Patel; Isaac S. Kohane; Paul Avillach (Bioinform., 2018)

comoRbidity: an R package for the systematic analysis of disease comorbidities. - Alba Gutiérrez-Sacristán; Àlex Bravo; Alexia Giannoula; Miguel Angel Mayer; Ferran Sanz; Laura Inés Furlong (Bioinform., 2018)

Supervised Learning Approaches to Detect Negation Cues in Spanish Reviews. - Lluís Domínguez-Mas; Francesco Ronzano; Laura I. Furlong (IberLEF@SEPLN, 2019)

ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer. - Judith Pérez-Granado; Janet Piñero González; Laura Inés Furlong (Database J. Biol. Databases Curation, 2019)

Comorbidity4j: a tool for interactive analysis of disease comorbidities over large patient datasets. - Francesco Ronzano; Alba Gutiérrez-Sacristán; Laura I. Furlong (Bioinform., 2019)

Clinical-Based and Expert Selection of Terms Related to Depression for Twitter Streaming and Language Analysis. - Angela Leis; Miguel Angel Mayer; Francesco Ronzano; Marta Torrens; Claudio Castillo; Laura I. Furlong; Ferran Sanz (MIE, 2020)

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. - David Salgado; Irina M. Armean; Michael Baudis; Sergi Beltran; Salvador Capella-Gutiérrez; Denise Carvalho-Silva; Victoria Dominguez Del Angel; Joaquín Dopazo; Laura I. Furlong; Bo Gao; Leyla Jael García Castro; Dietlind Gerloff; et al. (F1000Research, 2020)

The DisGeNET knowledge platform for disease genomics: 2019 update. - Janet Piñero González; Juan Manuel Ramírez-Anguita; Josep Saüch-Pitarch; Francesco Ronzano; Emilio Centeno; Ferran Sanz; Laura I. Furlong (Nucleic Acids Res., 2020)

A system-level analysis of patient disease trajectories based on clinical, phenotypic and molecular similarities. - Alexia Giannoula; Emilio Centeno; Miguel Angel Mayer; Ferran Sanz; Laura I. Furlong (Bioinform., 2021)

Visualization of automatically combined disease maps and pathway diagrams for rare diseases. - Piotr Gawron; David Hoksza; Janet Piñero; María Peña-Chilet; Marina Esteban-Medina; Jose Luis Fernandez-Rueda; Vincenza Colonna; Ewa Smula; Laurent Heirendt; François Ancien; Valentin Grouès; Venkata P. Satagopam; et al. (Frontiers Bioinform., 2023)

PretoxTM: a text mining system for extracting treatment-related findings from preclinical toxicology reports. - Javier Corvi; Nicolás Díaz-Roussel; José M. Fernández; Francesco Ronzano; Emilio Centeno; Pablo Accuosto; Celine Ibrahim; Shoji Asakura; Frank Bringezu; Mirjam Fröhlicher; Annika Kreuchwig; Yoko Nogami; et al. (J. Cheminformatics, 2025)