Analysis of miRNA expression profiles in breast cancer using biclustering. - Antonino Fiannaca; Massimo La Rosa; Laura La Paglia; Riccardo Rizzo; Alfonso Urso (BMC Bioinform., 2015)

A Problem-Driven Approach for Building a Bioinformatics GraphDB. - Antonino Fiannaca; Massimo La Rosa; Laura La Paglia; Antonio Messina; Riccardo Rizzo; Alfonso Urso (CIBB, 2016)

Integrated DB for Bioinformatics: A Case Study on Analysis of Functional Effect of MiRNA SNPs in Cancer. - Antonino Fiannaca; Laura La Paglia; Massimo La Rosa; Antonio Messina; Pietro Storniolo; Alfonso Urso (ITBAM, 2016)

MiRNATIP: a SOM-based miRNA-target interactions predictor. - Antonino Fiannaca; Massimo La Rosa; Laura La Paglia; Riccardo Rizzo; Alfonso Urso (BMC Bioinform., 2016)

Gremlin Language for Querying the BiographDB Integrated Biological Database. - Antonino Fiannaca; Laura La Paglia; Massimo La Rosa; Antonio Messina; Riccardo Rizzo; Dario Stabile; Alfonso Urso (IWBBIO (1), 2017)

nRC: non-coding RNA Classifier based on structural features. - Antonino Fiannaca; Massimo La Rosa; Laura La Paglia; Riccardo Rizzo; Alfonso Urso (BioData Min., 2017)

Identification of Key miRNAs in Regulation of PPI Networks. - Antonino Fiannaca; Laura La Paglia; Massimo La Rosa; Giosuè Lo Bosco; Riccardo Rizzo; Alfonso Urso (CIBB, 2018)

Deep learning models for bacteria taxonomic classification of metagenomic data. - Antonino Fiannaca; Laura La Paglia; Massimo La Rosa; Giosuè Lo Bosco; Giovanni Renda; Riccardo Rizzo; Salvatore Gaglio; Alfonso Urso (BMC Bioinform., 2018)

BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources. - Antonio Messina; Antonino Fiannaca; Laura La Paglia; Massimo La Rosa; Alfonso Urso (BMC Syst. Biol., 2018)

MiRNA therapeutics based on logic circuits of biological pathways. - Valeria Boscaino; Antonino Fiannaca; Laura La Paglia; Massimo La Rosa; Riccardo Rizzo; Alfonso Urso (BMC Bioinform., 2019)

miRTissue ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions. - Antonino Fiannaca; Laura La Paglia; Massimo La Rosa; Riccardo Rizzo; Alfonso Urso (BMC Bioinform., 2020)

BITS2019: the sixteenth annual meeting of the Italian society of bioinformatics. - Alfonso Urso; Antonino Fiannaca; Massimo La Rosa; Laura La Paglia; Giosuè Lo Bosco; Riccardo Rizzo (BMC Bioinform., 2020)

A Gene Ontology-Driven Wide and Deep Learning Architecture for Cell-Type Classification from Single-Cell RNA-seq Data. - Gianmarco Coppola; Antonino Fiannaca; Massimo La Rosa; Laura La Paglia; Alfonso Urso; Salvatore Gaglio (EANN, 2022)

GOWDL: gene ontology-driven wide and deep learning model for cell typing of scRNA-seq data. - Antonino Fiannaca; Massimo La Rosa; Laura La Paglia; Salvatore Gaglio; Alfonso Urso (Briefings Bioinform., 2023)

A Deep Learning Multi-omics Framework to Combine Microbiome and Metabolome Profiles for Disease Classification. - Andrea Licciardi; Antonino Fiannaca; Massimo La Rosa; Alfonso Urso; Laura La Paglia (ICANN (8), 2024)

A deep learning framework for disease classification integrating microbiome and metabolome: explaining multi-omics contribution. - Andrea Licciardi; Antonino Fiannaca; Massimo La Rosa; Alfonso Urso; Laura La Paglia (KES, 2024)

Explainable artificial intelligence models for key-metabolites identification in overweight subjects. - Isabella Mendolia; Antonino Fiannaca; Laura La Paglia; Alfonso Urso; Massimo La Rosa (KES, 2024)