INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments. - Stefano de Pretis; Theresia Kress; Marco J. Morelli; Giorgio E. M. Melloni; Laura Riva; Bruno Amati; Mattia Pelizzola (Bioinform., 2015)

Peak shape clustering reveals biological insights. - Marzia A. Cremona; Laura M. Sangalli; Simone Vantini; Gaetano Dellino; Pier Giuseppe Pelicci; Piercesare Secchi; Laura Riva (BMC Bioinform., 2015)

LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer. - Giorgio E. M. Melloni; Stefano de Pretis; Laura Riva; Mattia Pelizzola; Arnaud Céol; Jole Costanza; Heiko Müller 003; Luca Zammataro (BMC Bioinform., 2016)