Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes. - Elizabeth Arnaud; Laurel Cooper; Rosemary Shrestha; Naama Menda; Rex T. Nelson; Luca Matteis; Milko Skofic; Ruth Bastow; Pankaj Jaiswal; Lukas A. Mueller; Graham McLaren (KEOD, 2012)

Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources. - Ramona L. Walls; Hong Cui; James A. Macklin; Chris Mungall; Laurel Cooper; Dennis W. Stevenson; Pankaj Jaiswal (ICBO, 2012)

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR. - Kimberly Van Auken; Petra Fey; Tanya Z. Berardini; Robert J. Dodson; Laurel Cooper; Donghui Li; Juancarlos Chan; Yuling Li 005; Siddhartha Basu; Hans-Michael Müller; Rex L. Chisholm; Eva Huala; et al. (Database J. Biol. Databases Curation, 2012)

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. - Cecilia N. Arighi; Ben Carterette; K. Bretonnel Cohen; Martin Krallinger; W. John Wilbur; Petra Fey; Robert J. Dodson; Laurel Cooper; Ceri E. Van Slyke; Wasila M. Dahdul; Paula M. Mabee; Donghui Li; et al. (Database J. Biol. Databases Curation, 2013)

AISO: Annotation of Image Segments with Ontologies. - Nikhil Lingutla; Justin Preece; Sinisa Todorovic; Laurel Cooper; Laura Moore; Pankaj Jaiswal (J. Biomed. Semant., 2014)

The Planteome Project. - Laurel Cooper; Austin Meier; Justin Elser; Justin Preece; Xu Xu; Ryan Kitchen; Botong Qu; Eugene Zhang; Sinisa Todorovic; Pankaj Jaiswal; Marie-Angélique Laporte; Elizabeth Arnaud; et al. (ICBO/BioCreative, 2016)

Comparison of Ontology Mapping Techniques to Map Plant Trait Ontologies. - Marie-Angélique Laporte; Léo Valette; Laurel Cooper; Chris Mungall; Austin Meier; Pankaj Jaiswal; Elizabeth Arnaud (ICBO/BioCreative, 2016)

Annotating Germplasm to Planteome Reference Ontologies. - Austin Meier; Laurel Cooper; Justin Elser; Pankaj Jaiswal; Marie-Angélique Laporte (ICBO/BioCreative, 2016)

Overview of the interactive task in BioCreative V. - Qinghua Wang 003; Shabbir Syed-Abdul; Lara Almeida; Sophia Ananiadou; Yalbi I. Balderas-Martínez; Riza Batista-Navarro; David Campos 001; Lucy Chilton; Hui-Jou Chou; Gabriela Contreras; Laurel Cooper; Hong-Jie Dai; et al. (Database J. Biol. Databases Curation, 2016)

Interactive design and visualization of N-ary relationships. - Botong Qu; Prashant Kumar; Eugene Zhang; Pankaj Jaiswal; Laurel Cooper; Justin Elser; Yue Zhang 009 (SIGGRAPH Asia Symposium on Visualization, 2017)

A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants. - Lorena Endara; J. Gordon Burleigh; Laurel Cooper; Pankaj Jaiswal; Marie-Angélique Laporte; Hong Cui (ICBO, 2018)

OOPS: The Ontology of Plant Stress, A Semi-Automated Standardization Methodology. - Austin Meier; Marie-Angélique Laporte; Justin Elser; Laurel Cooper; Justin Preece; Pankaj Jaiswal; Jorrit H. Poelen (ICBO, 2018)

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. - Laurel Cooper; Austin Meier; Marie-Angélique Laporte; Justin Elser; Chris Mungall; Brandon T. Sinn; Dario Cavaliere; Seth Carbon; Nathan A. Dunn; Barry Smith 001; Botong Qu; Justin Preece; et al. (Nucleic Acids Res., 2018)

'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. - Ian Braun; James P. Balhoff; Tanya Z. Berardini; Laurel Cooper; Georgios V. Gkoutos; Lisa C. Harper; Eva Huala; Pankaj Jaiswal; Toni Kazic; Hilmar Lapp; James A. Macklin; Chelsea D. Specht; et al. (Application of Semantic Technology in Biodiversity Science, 2018)

The Plant Trait Ontology Links Wheat Traits for Crop Improvement and Genomics (short paper). - Laurel Cooper; Marie-Angélique Laporte; Justin Elser; Victoria Carollo Blake; Taner Z. Sen; Chris Mungall; Elizabeth Arnaud; Pankaj Jaiswal (ICBO/ODLS, 2020)

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. - Elizabeth Arnaud; Marie-Angélique Laporte; Soonho Kim; Céline Aubert; Sabina Leonelli; Berta Miro; Laurel Cooper; Pankaj Jaiswal; Gideon Kruseman; Rosemary Shrestha; Pier Luigi Buttigieg; Christopher J. Mungall; et al. (Patterns, 2020)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

GrainGenes: a data-rich repository for small grains genetics and genomics. - Eric Yao; Victoria C. Blake; Laurel Cooper; Charlene P. Wight; Steve L. Michel; H. Busra Cagirici; Gerard R. Lazo; Clayton L. Birkett; David J. Waring; Jean-Luc Jannink; Ian H. Holmes; Amanda J. Waters; et al. (Database J. Biol. Databases Curation, 2022)

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. - Jennifer L. Clarke; Laurel D. Cooper; Monica F. Poelchau; Tanya Z. Berardini; Justin Elser; Andrew D. Farmer; Stephen P. Ficklin; Sunita Kumari; Marie-Angélique Laporte; Rex T. Nelson; Rie Sadohara; Peter Selby; et al. (Database J. Biol. Databases Curation, 2023)

Using knowledge graphs to infer gene expression in plants. - Anne E. Thessen; Laurel Cooper; Tyson L. Swetnam; Harshad Hegde; Justin T. Reese; Justin Elser; Pankaj Jaiswal (Frontiers Artif. Intell., 2023)

Post-composing ontology terms for efficient phenotyping in plant breeding. - Naama Menda; Bryan J. Ellerbrock; Christiano C. Simoes; Srikanth Kumar Karaikal; Christine Nyaga; Mirella Flores-Gonzalez; Isaak Y. Tecle; David Lyon; Afolabi Agbona; Paterne A Agre; Prasad Peteti; Violet Akech; et al. (Database J. Biol. Databases Curation, 2025)