TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements. - Fabio C. P. Navarro; Jacob Hoops; Lauren Bellfy; Eliza Cerveira; Qihui Zhu; Chengsheng Zhang; Charles Lee; Mark B. Gerstein (PLoS Comput. Biol., 2019)

JAX-CNV: A Whole-genome Sequencing-based Algorithm for Copy Number Detection at Clinical Grade Level. - Wan-Ping Lee; Qihui Zhu; Xiaofei Yang 003; Silvia Liu; Eliza Cerveira; Mallory Ryan; Adam Mil-Homens; Lauren Bellfy; Kai Ye 001; Charles Lee; Chengsheng Zhang (Genom. Proteom. Bioinform., 2022)