Hidden Markov Models with Patterns and Their Application to Integrated Circuit Testing. - Laurent Bréhélin; Olivier Gascuel; Gilles Caraux (ECML, 2000)

Hidden Markov and Independence Models with Patterns for Sequential BIST. - Laurent Bréhélin; Olivier Gascuel; Gilles Caraux; Patrick Girard 001; Christian Landrault (VTS, 2000)

Hidden Markov Models with Patterns to Learn Boolean Vector Sequences and Application to the Built-In Self-Test for Integrated Circuits. - Laurent Bréhélin; Olivier Gascuel; Gilles Caraux (IEEE Trans. Pattern Anal. Mach. Intell., 2001)

Clustering Gene Expression Series with Prior Knowledge. - Laurent Bréhélin (WABI, 2005)

A Bayesian Approach for the Clustering of Short Time Series. - Laurent Bréhélin (Rev. d'Intelligence Artif., 2006)

Using repeated measurements to validate hierarchical gene clusters. - Laurent Bréhélin; Olivier Gascuel; Olivier Martin 002 (Bioinform., 2008)

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data. - Laurent Bréhélin; Jean-François Dufayard; Olivier Gascuel (BMC Bioinform., 2008)

Detection of new protein domains using co-occurrence: application to Plasmodium falciparum. - Nicolas Terrapon; Olivier Gascuel; Eric Maréchal; Laurent Bréhélin (Bioinform., 2009)

Enhancing Protein Domain Detection Using Domain Co-occurrence and Domain Exclusion. - Amel Ghouila; Olivier Gascuel; Sadok Ben Yahia; Laurent Bréhélin (DEXA Workshops, 2012)

Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum. - Nicolas Terrapon; Olivier Gascuel; Eric Maréchal; Laurent Bréhélin (BMC Bioinform., 2012)

Probing instructions for expression regulation in gene nucleotide compositions. - Chloé Bessière; May Taha; Florent Petitprez; Jimmy Vandel; Jean-Michel Marin; Laurent Bréhélin; Sophie Lèbre; Charles-Henri Lecellier (PLoS Comput. Biol., 2018)

Improving pairwise comparison of protein sequences with domain co-occurrence. - Christophe Menichelli; Olivier Gascuel; Laurent Bréhélin (PLoS Comput. Biol., 2018)

Accounting for ambiguity in ancestral sequence reconstruction. - Adrien Oliva; Sylvain Pulicani; Vincent Lefort; Laurent Bréhélin; Olivier Gascuel; Stéphane Guindon (Bioinform., 2019)

Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes. - Christophe Menichelli; Vincent Guitard; Rafael Miyazawa Martins; Sophie Lèbre; Jose-Juan Lopez-Rubio; Charles-Henri Lecellier; Laurent Bréhélin (PLoS Comput. Biol., 2021)

Machine Learning for regulatory genomics. (Apprentissage statistique pour l'étude de la régulation transcriptionnelle). - Laurent Bréhélin (2023)