Reassociation of fragments using multicentered multipolar expansions: peptide junction treatments to investigate electrostatic properties of proteins. - Laurent Emmanuel Dardenne; Araken dos Santos Werneck; Març de Oliveira Neto; Paulo Mascarello Bisch (J. Comput. Chem., 2001)

A Genetic Algorithm applied to the Three-Dimensional HP Protein Folding Model. - Fábio L. Custódio; Helio J. C. Barbosa; Laurent Emmanuel Dardenne (WOB, 2003)

Development of a Computational Environment for Protein Structure Prediction and Functional Analysis. - Shaila C. Rössle; Paulo Carvalho; Laurent Emmanuel Dardenne; Paulo Mascarello Bisch (WOB, 2003)

Selection-Insertion Schemes in Genetic Algorithms for the Flexible Ligand Docking Problem. - Camila Silva de Magalhães; Helio J. C. Barbosa; Laurent Emmanuel Dardenne (GECCO (1), 2004)

The BioPAUÁ Project: A Portal for Molecular Dynamics Using Grid Environment. - Alan Wilter; Carla Osthoff; Cristiane Oliveira; Diego Enry Barreto Gomes; Eduardo Hill; Laurent Emmanuel Dardenne; Patrícia M. Barros; Pedro A. A. G. L. Loureiro; Reynaldo Novaes; Pedro Geraldo Pascutti (BSB, 2005)

Molecular Dynamics Simulations of Cruzipains 1 and 2 at Different Temperatures. - Priscila V. S. Z. Capriles; Laurent Emmanuel Dardenne (BSB, 2007)

Genetic Algorithm for Finding Multiple Low Energy Conformations of Poly Alanine Sequences Under an Atomistic Protein Model. - Fábio L. Custódio; Helio J. C. Barbosa; Laurent Emmanuel Dardenne (BSB, 2007)

Full-atom ab initio protein structure prediction with a Genetic Algorithm using a similarity-based surrogate model. - Fábio L. Custódio; Helio J. C. Barbosa; Laurent Emmanuel Dardenne (IEEE Congress on Evolutionary Computation, 2010)

Improving Differential Evolution Accuracy for Flexible Ligand Docking Using a Multi-solution Strategy. - Camila Silva de Magalhães; Carlos Henrique dos S. Barbosa; Diogo Marinho Almeida; Laurent Emmanuel Dardenne (IDEAL, 2012)

A multiple minima genetic algorithm for protein structure prediction. - Fábio L. Custódio; Helio J. C. Barbosa; Laurent Emmanuel Dardenne (Appl. Soft Comput., 2014)

A dynamic niching genetic algorithm strategy for docking highly flexible ligands. - Camila Silva de Magalhães; Diogo Marinho Almeida; Helio José Corrêa Barbosa; Laurent Emmanuel Dardenne (Inf. Sci., 2014)

A multiobjective approach for protein structure prediction using a steady-state genetic algorithm with phenotypic crowding. - Gregorio Kappaun Rocha; Fábio Lima Custódio; Helio José Corrêa Barbosa; Laurent Emmanuel Dardenne (CIBCB, 2015)

Genetic operators based on backbone constraint angles for protein structure prediction. - Karina B. Santos; Fábio L. Custódio; Helio J. C. Barbosa; Laurent Emmanuel Dardenne (CIBCB, 2015)

Using Crowding-Distance in a Multiobjective Genetic Algorithm for Protein Structure Prediction. - Gregorio Kappaun Rocha; Fábio Lima Custódio; Helio J. C. Barbosa; Laurent Emmanuel Dardenne (GECCO (Companion), 2016)

Using an aggregation tree to arrange energy function terms for protein structure prediction. - Gregorio Kappaun Rocha; Jaqueline S. Angelo; Karina B. Santos; Fábio L. Custódio; Laurent Emmanuel Dardenne; Helio J. C. Barbosa (CIBCB, 2017)

Improving de novo protein structure prediction using contact maps information. - Karina B. Santos; Gregorio Kappaun Rocha; Fábio Lima Custódio; Helio J. C. Barbosa; Laurent Emmanuel Dardenne (CIBCB, 2017)

Inserting Co-Evolution Information from Contact Maps into a Multiobjective Genetic Algorithm for Protein Structure Prediction. - Gregorio Kappaun Rocha; Karina B. dos Santos; Jaqueline S. Angelo; Fábio L. Custódio; Helio J. C. Barbosa; Laurent Emmanuel Dardenne (CEC, 2018)

Estimating Protein Structure Prediction Models Quality Using Convolutional Neural Networks. - Emerson Correia Lima; Fábio Lima Custódio; Gregorio Kappaun Rocha; Laurent Emmanuel Dardenne (IJCNN, 2018)

Prion protein conversion triggered by acidic condition: a molecular dynamics study through different force fields. - Helen Nathalia Thompson; Claudia Elizabeth Thompson; Rafael A. Caceres; Laurent Emmanuel Dardenne; Paulo A. Netz; Hubert Stassen (J. Comput. Chem., 2018)

Highly Flexible Ligand Docking: Benchmarking of the DockThor Program on the LEADS-PEP Protein-Peptide Data Set. - Karina B. Santos; Isabella A. Guedes; Ana L. M. Karl; Laurent Emmanuel Dardenne (J. Chem. Inf. Model., 2020)

A Generative Evolutionary Many-Objective Framework: A Case Study in Antimicrobial Agent Design. - Matheus Muller Pereira Da Silva; Jaqueline Silva Angelo; Isabella Alvim Guedes; Laurent Emmanuel Dardenne (GECCO Companion, 2024)