WordCloud: a Cytoscape plugin to create a visual semantic summary of networks. - Layla Oesper; Daniele Merico; Ruth Isserlin; Gary D. Bader (Source Code Biol. Medicine, 2011)

Reconstructing cancer genomes from paired-end sequencing data. - Layla Oesper; Anna M. Ritz; Sarah J. Aerni; Ryan Drebin; Benjamin J. Raphael (BMC Bioinform., 2012)

Workshop: Reconstructing the organization of cancer genomes. - Layla Oesper; Benjamin J. Raphael (ICCABS, 2013)

Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data. - Layla Oesper; Ahmad Mahmoody; Benjamin J. Raphael (RECOMB, 2013)

Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data. - Layla Oesper; Gryte Satas; Benjamin J. Raphael (Bioinform., 2014)

Reconstruction of clonal trees and tumor composition from multi-sample sequencing data. - Mohammed El-Kebir; Layla Oesper; Hannah Acheson-Field; Benjamin J. Raphael (Bioinform., 2015)

Computational Characterization of Heterogeneity and Rearrangements in Cancer. - Layla Oesper (2015)

Multi-state Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing. - Mohammed El-Kebir; Gryte Satas; Layla Oesper; Benjamin J. Raphael (RECOMB, 2016)

A Consensus Approach to Infer Tumor Evolutionary Histories. - Kiya Govek; Camden Sikes; Layla Oesper (BCB, 2018)

Examining Tumor Phylogeny Inference in Noisy Sequencing Data. - Kiran Tomlinson; Layla Oesper (BIBM, 2018)

Identifying simultaneous rearrangements in cancer genomes. - Layla Oesper; Simone Dantas; Benjamin J. Raphael (Bioinform., 2018)

Expanding Undergraduate Exposure to Computer Science Subfields: Resources and Lessons from a Hands-on Computational Biology Workshop. - Layla Oesper; Anya E. Vostinar (SIGCSE, 2020)

Distance measures for tumor evolutionary trees. - Zach Dinardo; Kiran Tomlinson; Anna M. Ritz; Layla Oesper (Bioinform., 2020)

The evolutionary history of 2,658 cancers. - Moritz Gerstung; Clemency Jolly; Ignaty Leshchiner; Stefan C. Dentro; Santiago Gonzalez; Thomas J. Mitchell; Yulia Rubanova; Pavana Anur; Kaixian Yu; Maxime Tarabichi; Amit G. Deshwar; Jeff Wintersinger; et al. (Nat., 2020)

Combining Distance Measures on Tumor Evolutionary Trees. - Cecilia Ehrlichman; Layla Oesper (BIBM, 2022)

An Approach to Relax the Infinite Sites Assumption in Tumor Phylogeny Distance Measures. - Quoc Nguyen; Layla Oesper (BIBM, 2022)

Deriving consensus tumor trees using integer linear programming. - Matthew Smith-Erb; Ziyun Guang; Layla Oesper (BIBM, 2022)

GraPhyC: Using Consensus to Infer Tumor Evolution. - Kiya Govek; Camden Sikes; Yangqiaoyu Zhou; Layla Oesper (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Generalized Matching Distance: Tumor Phylogeny Comparison Beyond the Infinite Sites Assumption. - Quoc Nguyen; Layla Oesper (BCB, 2023)

A weighted distance-based approach for deriving consensus tumor evolutionary trees. - Ziyun Guang; Matthew Smith-Erb; Layla Oesper (Bioinform., 2023)