A mono-objective evolutionary algorithm for Protein Structure Prediction in structural and energetic contexts. - Rodrigo Antonio Faccioli; Ivan Nunes da Silva; Leandro Oliveira Bortot; Alexandre C. B. Delbem (IEEE Congress on Evolutionary Computation, 2012)

Multi-Objective Evolutionary Algorithm NSGA-II for Protein Structure Prediction using Structural and Energetic Properties. - Rodrigo Antonio Faccioli; Leandro Oliveira Bortot; Alexandre C. B. Delbem (Int. J. Nat. Comput. Res., 2014)

Making Soup: Preparing and Validating Models of the Bacterial Cytoplasm for Molecular Simulation. - Leandro Oliveira Bortot; Zahedeh Bashardanesh; David van der Spoel (J. Chem. Inf. Model., 2020)

ParKVFinder: A thread-level parallel approach in biomolecular cavity detection. - João Victor da Silva Guerra; Helder Veras Ribeiro filho; Leandro Oliveira Bortot; Rodrigo Vargas Honorato; José Geraldo de Carvalho Pereira; Paulo Sérgio Lopes-de-Oliveira (SoftwareX, 2020)

pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science. - João Victor da Silva Guerra; Helder Veras Ribeiro filho; Gabriel Ernesto Jara; Leandro Oliveira Bortot; José Geraldo de Carvalho Pereira; Paulo Sérgio Lopes-de-Oliveira (BMC Bioinform., 2021)