Age Prediction by DNA Methylation in Neural Networks. - Lechuan Li; Chonghao Zhang; Shiyu Liu; Hannah Guan; Yu Zhang 150 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Joint embedding of biological networks for cross-species functional alignment. - Lechuan Li; Ruth Dannenfelser; Yu Zhu 003; Nathaniel Hejduk; Santiago Segarra; Vicky Yao (Bioinform., 2023)

Enhancing Gene Set Analysis in Embedding Spaces: A Novel Best-Match Approach. - Lechuan Li; Ruth Dannenfelser; Charlie Cruz; Vicky Yao (RECOMB, 2024)

ALPINE: An Interpretable Approach for Decoding Phenotypes from Multi-condition Sequencing Data. - Wei-Hao Lee; Lechuan Li; Ruth Dannenfelser; Vicky Yao (RECOMB, 2025)