String Layouts for a Redundant Array of Inexpensive Disks. - Lee Aaron Newberg; David S. Wolfe (Algorithmica, 1994)

Physical Mapping of Chromosomes: A Combinatorial Problem in Molecular Biology. - Farid Alizadeh; Richard M. Karp; Lee Aaron Newberg; Deborah K. Weisser (Algorithmica, 1995)

An algorithm for analysing probed partial digestion experiments. - Richard M. Karp; Lee Aaron Newberg (Comput. Appl. Biosci., 1995)

The Number of Clone Orderings. - Lee Aaron Newberg (Discret. Appl. Math., 1996)

PhyloScan: identification of transcription factor binding sites using cross-species evidence. - C. Steven Carmack; Lee Ann McCue; Lee Aaron Newberg; Charles E. Lawrence (Algorithms Mol. Biol., 2007)

A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction. - Lee Aaron Newberg; William A. Thompson; Sean Conlan; Thomas M. Smith; Lee Ann McCue; Charles E. Lawrence (Bioinform., 2007)

The Gibbs Centroid Sampler. - William A. Thompson; Lee Aaron Newberg; Sean Conlan; Lee Ann McCue; Charles E. Lawrence (Nucleic Acids Res., 2007)

Memory-efficient dynamic programming backtrace and pairwise local sequence alignment. - Lee Aaron Newberg (Bioinform., 2008)

Significance of Gapped Sequence Alignments. - Lee Aaron Newberg (J. Comput. Biol., 2008)

Error statistics of hidden Markov model and hidden Boltzmann model results. - Lee Aaron Newberg (BMC Bioinform., 2009)

Exact Calculation of Distributions on Integers, with Application to Sequence Alignment. - Lee Aaron Newberg; Charles E. Lawrence (J. Comput. Biol., 2009)

Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data. - Michael J. Palumbo; Lee Aaron Newberg (Nucleic Acids Res., 2010)