Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software. - Lee Kamentsky; Thouis R. Jones; Adam Fraser; Mark-Anthony Bray; David J. Logan; Katherine L. Madden; Vebjorn Ljosa; Curtis Rueden; Kevin W. Eliceiri; Anne E. Carpenter (Bioinform., 2011)

QSAR-Driven Discovery of Novel Chemical Scaffolds Active against Schistosoma mansoni. - Cleber C. Melo-Filho; Rafael Ferreira Dantas; Rodolpho C. Braga; Bruno Junior Neves; Mario R. Senger; Walter C. G. Valente; João M. Rezende-Neto; Willian T. Chaves; Eugene N. Muratov; Ross A. Paveley; Nicholas Furnham; Lee Kamentsky; et al. (J. Chem. Inf. Model., 2016)

Anisotropic EM Segmentation by 3D Affinity Learning and Agglomeration. - Toufiq Parag; Fabian Tschopp; William Grisaitis; Srinivas C. Turaga; Xuewen Zhang; Brian Matejek; Lee Kamentsky; Jeff W. Lichtman; Hanspeter Pfister (CoRR, 2017)

Scalable Interactive Visualization for Connectomics. - Daniel Haehn; John Hoffer; Brian Matejek; Adi Suissa-Peleg; Ali K. Al-Awami; Lee Kamentsky; Felix Gonda; Eagon Meng; William Zhang; Richard Schalek; Alyssa Wilson; Toufiq Parag; et al. (Informatics, 2017)

Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets. - Toufiq Parag; Daniel R. Berger; Lee Kamentsky; Benedikt Staffler; Donglai Wei 001; Moritz Helmstaedter; Jeff W. Lichtman; Hanspeter Pfister (ECCV Workshops (6), 2018)

Two Stream Active Query Suggestion for Active Learning in Connectomics. - Zudi Lin; Donglai Wei 001; Won-Dong Jang; Siyan Zhou; Xupeng Chen; Xueying Wang 002; Richard Schalek; Daniel R. Berger; Brian Matejek; Lee Kamentsky; Adi Suissa-Peleg; Daniel Haehn; et al. (ECCV (18), 2020)

Active Learning Pipeline for Brain Mapping in a High Performance Computing Environment. - Adam Michaleas; Lars Gjesteby; Michael P. Snyder; David Chavez; Meagan Ash; Matthew A. Melton; Damon G. Lamb; Sara N. Burke; Kevin J. Otto; Lee Kamentsky; Webster Guan; Kwanghun Chung; et al. (HPEC, 2020)

Axon Tracing and Centerline Detection using Topologically-Aware 3D U-Nets. - Dylan Pollack; Lars A. Gjesteby; Michael Snyder 001; David Chavez; Lee Kamentsky; Kwanghun Chung; Laura J. Brattain (EMBC, 2022)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)