R-PASS: A Fast Structure-Based RNA Sequence Alignment Algorithm. - Yanan Jiang; Weijia Xu; Lee Parnell Thompson; Robin Ray Gutell; Daniel P. Miranker (BIBM, 2011)

Fast scalable selection algorithms for large scale data. - Lee Parnell Thompson; Weijia Xu; Daniel P. Miranker (IEEE BigData, 2013)

The Adaptive Projection Forest: Using adjustable exclusion and parallelism in metric space indexes. - Lee Parnell Thompson; Weijia Xu; Daniel P. Miranker (IEEE BigData, 2014)

ADaM: augmenting existing approximate fast matching algorithms with efficient and exact range queries. - Nathan L. Clement; Lee Parnell Thompson; Daniel P. Miranker (BMC Bioinform., 2014)