Measurements of the Impact of 3′ End Sequences on Gene Expression Reveal Wide Range and Sequence Dependent Effects. - Ophir Shalem; Lucas B. Carey; Danny Zeevi; Eilon Sharon; Leeat Keren; Adina Weinberger; Orna Dahan; Yitzhak Pilpel; Eran Segal (PLoS Comput. Biol., 2013)

Modeling Multiplexed Images with Spatial-LDA Reveals Novel Tissue Microenvironments. - Zhenghao Chen; Ilya Soifer; Hugo Hilton; Leeat Keren; Vladimir Jojic (J. Comput. Biol., 2020)

MAUI (MBI Analysis User Interface) - An image processing pipeline for Multiplexed Mass Based Imaging. - Alex Baranski; Idan Milo; Shirley Greenbaum; John-Paul Oliveria; Dunja Mrdjen; Michael Angelo; Leeat Keren (PLoS Comput. Biol., 2021)