Informative priors based on transcription factor structural class improve de novo motif discovery. - Leelavati Narlikar; Raluca Gordân; Uwe Ohler; Alexander J. Hartemink (ISMB (Supplement of Bioinformatics), 2006)

Sequence features of DNA binding sites reveal structural class of associated transcription factor. - Leelavati Narlikar; Alexander J. Hartemink (Bioinform., 2006)

Nucleosome Occupancy Information Improves de novo Motif Discovery. - Leelavati Narlikar; Raluca Gordân; Alexander J. Hartemink (RECOMB, 2007)

A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast. - Leelavati Narlikar; Raluca Gordân; Alexander J. Hartemink (PLoS Comput. Biol., 2007)

A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery. - Raluca Gordân; Leelavati Narlikar; Alexander J. Hartemink (RECOMB, 2008)

Towards a Complete Transcriptional Regulatory Code: Improved Motif Discovery Using Informative Priors. - Leelavati Narlikar (2008)

CLARE: Cracking the LAnguage of Regulatory Elements. - Leila Taher; Leelavati Narlikar; Ivan Ovcharenko (Bioinform., 2012)

No Promoter Left Behind (NPLB): learn de novo promoter architectures from genome-wide transcription start sites. - Sneha Mitra; Leelavati Narlikar (Bioinform., 2016)

DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP. - Sneha Mitra; Anushua Biswas; Leelavati Narlikar (PLoS Comput. Biol., 2018)

Resolving diverse protein-DNA footprints from exonuclease-based ChIP experiments. - Anushua Biswas; Leelavati Narlikar (Bioinform., 2021)