A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge. - Young-Rae Cho; Lei Shi 021; Murali Ramanathan; Aidong Zhang (BMC Bioinform., 2008)

Functional module detection by functional flow pattern mining in protein interaction networks. - Young-Rae Cho; Lei Shi 021; Aidong Zhang (BMC Bioinform., 2008)

flowNet: Flow-Based Approach for Efficient Analysis of Complex Biological Networks. - Young-Rae Cho; Lei Shi 021; Aidong Zhang (ICDM, 2009)

ANN Based Protein Function Prediction Using Integrated Protein-Protein Interaction Data. - Lei Shi 021; Young-Rae Cho; Aidong Zhang (IJCBS, 2009)

Functional Flow Simulation Based Analysis of Protein Interaction Network. - Lei Shi 021; Young-Rae Cho; Aidong Zhang (BIBE, 2010)

Semi-supervised learning protein complexes from protein interaction networks. - Lei Shi 021; Aidong Zhang (BIBM, 2010)

An ACO based functional module detection algorithm for protein interaction networks. - Lei Shi 021; Aidong Zhang (BCB, 2011)

Clustering PPI data based on Improved functional-flow model through Quantum-behaved PSO. - Xiujuan Lei; Xu Huang; Lei Shi 021; Aidong Zhang (Int. J. Data Min. Bioinform., 2012)