A gyrokinetic continuum code based on the numerical Lie transform (NLT) method. - Lei Ye 004; Yingfeng Xu; Xiaotao Xiao; Zongliang Dai; Shaojie Wang (J. Comput. Phys., 2016)

Gyrokinetic simulation of ITG turbulence with toroidal geometry including the magnetic axis by using field-aligned coordinates. - Zongliang Dai; Yingfeng Xu; Lei Ye 004; Xiaotao Xiao; Shaojie Wang (Comput. Phys. Commun., 2019)

Monte Carlo orbit-following simulations including the finite Larmor radius effect based on a phase-space coordinate transform method. - Yingfeng Xu; Wenfeng Guo; Youjun Hu; Lei Ye 004; Xiaotao Xiao; Shaojie Wang (Comput. Phys. Commun., 2019)

Re-splitting δf method for electro-magnetic gyrokinetic particle-in-cell (PIC) simulation of tokamak plasmas. - Lei Ye 004; Yang Chen (Comput. Phys. Commun., 2020)

Time diffusion method for gyrokinetic simulation of electrostatic turbulence with kinetic electrons. - Peng-fei Zhao; Lei Ye 004; Nong Xiang (Comput. Phys. Commun., 2021)

Corrigendum to "Time diffusion method for gyrokinetic simulation of electrostatic turbulence with kinetic electrons" [Comput. Phys. Commun. 269 (2021) 108114]. - Peng-fei Zhao; Lei Ye 004; Nong Xiang (Comput. Phys. Commun., 2022)

Gyrokinetic Particle-in-Cell simulation of the effect of compressional magnetic perturbations on the microscopic instabilities in Tokamak. - Yuheng Yang; Lei Ye 004; Yang Chen; Nong Xiang; Youwen Sun (Comput. Phys. Commun., 2023)

Extracting the nearest canonical equilibrium distribution via natural gradient descent method. - Chao Li; Xiaotao Xiao; Lei Ye 004; Zhibin Guo (Comput. Phys. Commun., 2025)