Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. - Nameeta Y. Shah; Olivier Couronne; Len A. Pennacchio; Michael Brudno; Serafim Batzoglou; E. Wes Bethel; Edward M. Rubin; Bernd Hamann; Inna Dubchak (Bioinform., 2004)

SNP-VISTA: An interactive SNP visualization tool. - Nameeta Y. Shah; Michael V. Teplitsky; Simon Minovitsky; Len A. Pennacchio; Philip Hugenholtz; Bernd Hamann; Inna Dubchak (BMC Bioinform., 2005)

VISTA Enhancer Browser - a database of tissue-specific human enhancers. - Axel Visel; Simon Minovitsky; Inna Dubchak; Len A. Pennacchio (Nucleic Acids Res., 2007)

1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions. - Hiren J. Joshi; Katy M. Christiansen; Joffrey Fitz; Jun Cao; Anna Lipzen; Joel Martin; A. Michelle Smith-Moritz; Len A. Pennacchio; Wendy S. Schackwitz; Detlef Weigel; Joshua L. Heazlewood (Bioinform., 2012)

Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb. - Remo Monti; Iros Barozzi; Marco Osterwalder; Elizabeth Lee; Momoe Kato; Tyler H. Garvin; Ingrid Plajzer-Frick; Catherine S. Pickle; Jennifer A. Akiyama; Veena Afzal; Niko Beerenwinkel; Diane E. Dickel; et al. (PLoS Comput. Biol., 2017)

The changing mouse embryo transcriptome at whole tissue and single-cell resolution. - Peng He; Brian A. Williams; Diane Trout; Georgi K. Marinov; Henry Amrhein; Libera Berghella; Say-Tar Goh; Ingrid Plajzer-Frick; Veena Afzal; Len A. Pennacchio; Diane E. Dickel; Axel Visel; et al. (Nat., 2020)