Associative Clustering. - Janne Sinkkonen; Janne Nikkilä; Leo Lahti; Samuel Kaski (ECML, 2004)

Associative Clustering for Exploring Dependencies between Functional Genomics Data Sets. - Samuel Kaski; Janne Nikkilä; Janne Sinkkonen; Leo Lahti; Juha E. A. Knuuttila; Christophe Roos (IEEE ACM Trans. Comput. Biol. Bioinform., 2005)

Global modeling of transcriptional responses in interaction networks. - Leo Lahti; Juha E. A. Knuuttila; Samuel Kaski (Bioinform., 2010)

Probabilistic analysis of the human transcriptome with side information. - Leo Lahti (2010)

Probabilistic analysis of the human transcriptome with side information - Leo Lahti (CoRR, 2011)

A brief overview on the BioPAX and SBML standards for formal presentation of complex biological knowledge - Leo Lahti (CoRR, 2011)

Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays. - Leo Lahti; Laura Elo; Tero Aittokallio; Samuel Kaski (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Fully scalable online-preprocessing algorithm for short oligonucleotide microarray atlases - Leo Lahti; Aurora Torrente; Laura Elo; Alvis Brazma; Johan Rung (CoRR, 2012)

Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review. - Leo Lahti; Martin Schäfer; Hans-Ulrich Klein; Silvio Bicciato; Martin Dugas (Briefings Bioinform., 2013)

Beyond open access: the changing culture of producing and disseminating scientific knowledge. - Heidi Laine; Leo Lahti; Anne Lehto; Samuli Ollila; Markus Miettinen (MindTrek, 2015)

Printing in a Periphery: a Quantitative Study of Finnish Knowledge Production, 1640-1828. - Mikko Tolonen; Niko Ilomäki; Hege Roivainen; Leo Lahti (DH, 2016)

Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process. - Keith Harris; Todd L. Parsons; Umer Zeeshan Ijaz; Leo Lahti; Ian H. Holmes; Christopher Quince (Proc. IEEE, 2017)

Retrieval and Analysis of Eurostat Open Data with the eurostat Package. - Leo Lahti; Janne Huovari; Markus Kainu; Przemyslaw Biecek (R J., 2017)

Open Data Science. - Leo Lahti (IDA, 2018)

A Hierarchical Ornstein-Uhlenbeck Model for Stochastic Time Series Analysis. - Ville Laitinen; Leo Lahti (IDA, 2018)

Reconstructing Intellectual Networks: From the ESTC's bibliographic metadata to historical material. - Mark J. Hill; Ville Vaara; Tanja Säily; Leo Lahti; Mikko Tolonen (DHN, 2019)

Interdisciplinary Collaboration in Studying Newspaper Materiality. - Eetu Mäkelä; Mikko Tolonen; Jani Marjanen; Antti Kanner; Ville Vaara; Leo Lahti (TwinTalks@DHN, 2019)

Scaling Up Bibliographic Data Science. - Mikko Tolonen; Jani Marjanen; Hege Roivainen; Leo Lahti (DHN, 2019)

Quantifying Bias and Uncertainty in Historical Data Collections with Probabilistic Programming. - Leo Lahti; Eetu Mäkelä; Mikko Tolonen (CHR, 2020)

Wrangling with Non-Standard Data. - Eetu Mäkelä; Krista Lagus; Leo Lahti; Tanja Säily; Mikko Tolonen; Mika Hämäläinen; Samuli Kaislaniemi; Terttu Nevalainen (DHN, 2020)

Book printing and the rise of the vernacular in Europe, 1500-1820. - Jani Marjanen; Hege Roivainen; Leo Lahti; Mikko Tolonen (DH, 2020)

Data-driven analysis of canonical works in early modern Britain. - Mikko Tolonen; Mark J. Hill; Ali Ijaz; Ville Vaara; Leo Lahti (DH, 2020)

Probabilistic Analysis of Early Modern British Book Prices. - Iiro Tiihonen; Mikko Tolonen; Leo Lahti (CHR, 2021)

Three-Species Lotka-Volterra Model with Respect to Caputo and Caputo-Fabrizio Fractional Operators. - Moein Khalighi; Leila Eftekhari; Soleiman Hosseinpour; Leo Lahti (Symmetry, 2021)

Probabilistic Multivariate Early Warning Signals. - Ville Laitinen; Leo Lahti (CMSB, 2022)

FdeSolver: A Julia Package for Solving Fractional Differential Equations. - Moein Khalighi; Giulio Benedetti; Leo Lahti (CoRR, 2022)

Enhancing biomarkers with co-abundance. - Leo Lahti (Nat. Comput. Sci., 2022)

Quantifying the impact of ecological memory on the dynamics of interacting communities. - Moein Khalighi; Guilhem Sommeria-Klein; Didier Gonze; Karoline Faust; Leo Lahti (PLoS Comput. Biol., 2022)

Fractional model of COVID-19 with pathogens as shedding effects. - Faïçal Ndaïrou; Moein Khalighi; Leo Lahti (CoRR, 2023)

Dealing with dimensionality: the application of machine learning to multi-omics data. - Dylan Feldner-Busztin; Panos Firbas Nisantzis; Shelley Jane Edmunds; Gergely Boza; Fernando Racimo; Shyam Gopalakrishnan; Morten Tønsberg Limborg; Leo Lahti; Gonzalo G. de Polavieja (Bioinform., 2023)

Elementary methods provide more replicable results in microbial differential abundance analysis. - Juho Pelto; Kari Auranen; Janne V. Kujala; Leo Lahti (Briefings Bioinform., 2024)

Learning and teaching biological data science in the Bioconductor community. - Jenny Drnevich; Frederick J. Tan; Fabricio Almeida-Silva; Robert Castelo; Aedín C. Culhane; Sean Davis 001; Maria A. Doyle; Susan P. Holmes; Leo Lahti; Alexandru Mahmoud; Kozo Nishida; Marcel Ramos; et al. (CoRR, 2024)

iSEEtree: interactive explorer for hierarchical data. - Giulio Benedetti; Ely Seraidarian; Theotime Pralas; Akewak Jeba; Tuomas Borman; Leo Lahti (CoRR, 2024)

Algorithm 1047: FdeSolver, a Julia Package for Solving Fractional Differential Equations. - Moein Khalighi; Giulio Benedetti; Leo Lahti (ACM Trans. Math. Softw., 2024)

Learning and teaching biological data science in the Bioconductor community. - Jenny Drnevich; Frederick J. Tan; Fabricio Almeida-Silva; Robert Castelo; Aedín C. Culhane; Sean R. Davis; Maria A. Doyle; Ludwig Geistlinger; Andrew R. Ghazi; Susan P. Holmes; Leo Lahti; Alexandru Mahmoud; et al. (PLoS Comput. Biol., 2025)

Validating and Extracting Information from National Identification Numbers in R: The Case of Finland and Sweden. - Pyry Kantanen; Erik Bülow; Aleksi Lahtinen; Måns Magnusson; Jussi Paananen; Leo Lahti (R J., 2025)