MBO(N)D: A multibody method for long-time molecular dynamics simulations. - Hon M. Chun; Carlos E. Padilla; Donovan N. Chin; Masakatsu Watanabe; Valeri I. Karlov; Howard E. Alper; Keto Soosaar; Kim B. Blair; Oren M. Becker; Leo S. D. Caves; Robert Nagle; David N. Haney; et al. (J. Comput. Chem., 2000)

Bio3d: an R package for the comparative analysis of protein structures. - Barry J. Grant; Ana P. C. Rodrigues; Karim M. ElSawy; James Andrew McCammon; Leo S. D. Caves (Bioinform., 2006)

Folding Protein-Like Structures with Open L-Systems. - Gemma B. Danks; Susan Stepney; Leo S. D. Caves (ECAL, 2007)

Protein folding with stochastic L-systems. - Gemma B. Danks; Susan Stepney; Leo S. D. Caves (ALIFE, 2008)

Cotranslational Protein Folding with L-systems. - Gemma B. Danks; Susan Stepney; Leo S. D. Caves (ECAL (1), 2009)

RBN-World - A Sub-symbolic Artificial Chemistry. - Adam Faulconbridge; Susan Stepney; Julian F. Miller; Leo S. D. Caves (ECAL (1), 2009)

CHARMM: The biomolecular simulation program. - Bernard R. Brooks; Charles L. Brooks III; Alexander D. MacKerell Jr.; Lennart Nilsson; Robert J. Petrella; Benoît Roux; Y. Won; G. Archontis; Christian Bartels; Stefan Boresch; Amedeo Caflisch; Leo S. D. Caves; et al. (J. Comput. Chem., 2009)

RBN-World - The Hunt for a Rich AChem. - Adam Faulconbridge; Susan Stepney; Julian F. Miller; Leo S. D. Caves (ALIFE, 2010)

Controlling Complex Dynamics with Artificial Biochemical Networks. - Michael A. Lones; Andy M. Tyrrell; Susan Stepney; Leo S. D. Caves (EuroGP, 2010)

Controlling legged robots with coupled artificial biochemical networks. - Michael A. Lones; Andy M. Tyrrell; Susan Stepney; Leo S. D. Caves (ECAL, 2011)

Evolved Artificial Signalling Networks for the Control of a Conservative Complex Dynamical System. - Luis A. Fuente; Michael A. Lones; Alexander P. Turner; Susan Stepney; Leo S. D. Caves; Andy M. Tyrrell (IPCAT, 2012)

Using Artificial Epigenetic Regulatory Networks to Control Complex Tasks within Chaotic Systems. - Alexander P. Turner; Michael A. Lones; Luis A. Fuente; Susan Stepney; Leo S. D. Caves; Andy M. Tyrrell (IPCAT, 2012)

Peptide Inhibitors of Viral Assembly: A Novel Route to Broad-Spectrum Antivirals. - Karim M. ElSawy; Reidun Twarock; Chandra S. Verma 001; Leo S. D. Caves (J. Chem. Inf. Model., 2012)

Adaptive robotic gait control using coupled artificial signalling networks, hopf oscillators and inverse kinematics. - Luis A. Fuente; Michael A. Lones; Alexander P. Turner; Leo S. D. Caves; Susan Stepney; Andy M. Tyrrell (IEEE Congress on Evolutionary Computation, 2013)

The artificial epigenetic network. - Alexander P. Turner; Michael A. Lones; Luis A. Fuente; Susan Stepney; Leo S. D. Caves; Andy M. Tyrrell (ICES, 2013)

Computational models of signalling networks for non-linear control. - Luis A. Fuente; Michael A. Lones; Alexander P. Turner; Susan Stepney; Leo S. D. Caves; Andy M. Tyrrell (Biosyst., 2013)

The incorporation of epigenetics in artificial gene regulatory networks. - Alexander P. Turner; Michael A. Lones; Luis A. Fuente; Susan Stepney; Leo S. D. Caves; Andy M. Tyrrell (Biosyst., 2013)

Biochemical connectionism. - Michael A. Lones; Alexander P. Turner; Luis A. Fuente; Susan Stepney; Leo S. D. Caves; Andy M. Tyrrell (Nat. Comput., 2013)

Special issue on the frontiers of natural computing. - Michael A. Lones; Andy M. Tyrrell; Susan Stepney; Leo S. D. Caves (Nat. Comput., 2013)

Artificial Biochemical Networks: Evolving Dynamical Systems to Control Dynamical Systems. - Michael A. Lones; Luis A. Fuente; Alexander P. Turner; Leo S. D. Caves; Susan Stepney; Stephen L. Smith 002; Andy M. Tyrrell (IEEE Trans. Evol. Comput., 2014)

Artificial Epigenetic Networks: Automatic Decomposition of Dynamical Control Tasks Using Topological Self-Modification. - Alexander P. Turner; Leo S. D. Caves; Susan Stepney; Andy M. Tyrrell; Michael A. Lones (IEEE Trans. Neural Networks Learn. Syst., 2017)

Review of Model Systems in Biology: History, Philosophy, and Practical Concerns by Georg Striedter. - Leo S. D. Caves (Artif. Life, 2024)