Deep learning with word embeddings improves biomedical named entity recognition. - Maryam Habibi; Leon Weber; Mariana L. Neves; David Luis Wiegandt; Ulf Leser (Bioinform., 2017)

NLProlog: Reasoning with Weak Unification for Question Answering in Natural Language. - Leon Weber; Pasquale Minervini; Jannes Münchmeyer; Ulf Leser; Tim Rocktäschel (ACL (1), 2019)

Classifying German Animal Experiment Summaries with Multi-lingual BERT at CLEF eHealth 2019 Task 1. - Mario Sänger; Leon Weber; Madeleine Kittner; Ulf Leser (CLEF (Working Notes), 2019)

Segmentation of Radar-Recorded Heart Sound Signals Using Bidirectional LSTM Networks. - Kilin Shi; Sven Schellenberger; Leon Weber; Jan Philipp Wiedemann; Fabian Michler; Tobias Steigleder; Anke Malessa; Fabian Lurz; Christoph Ostgathe; Robert Weigel; Alexander Koelpin (EMBC, 2019)

Biomedical Event Extraction as Multi-turn Question Answering. - Xing David Wang; Leon Weber; Ulf Leser (LOUHI@EMNLP, 2020)

HUNER: improving biomedical NER with pretraining. - Leon Weber; Jannes Münchmeyer; Tim Rocktäschel; Maryam Habibi; Ulf Leser (Bioinform., 2020)

PEDL: extracting protein-protein associations using deep language models and distant supervision. - Leon Weber; Kirsten Thobe; Oscar Arturo Migueles Lozano; Jana Wolf; Ulf Leser (Bioinform., 2020)

WBI at MEDIQA 2021: Summarizing Consumer Health Questions with Generative Transformers. - Mario Sänger; Leon Weber; Ulf Leser (BioNLP@NAACL-HLT, 2021)

Extend, don't rebuild: Phrasing conditional graph modification as autoregressive sequence labelling. - Leon Weber; Jannes Münchmeyer; Samuele Garda; Ulf Leser (EMNLP (1), 2021)

HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition. - Leon Weber; Mario Sänger; Jannes Münchmeyer; Maryam Habibi; Ulf Leser; Alan Akbik (Bioinform., 2021)

BEEDS: Large-Scale Biomedical Event Extraction using Distant Supervision and Question Answering. - Xing David Wang; Ulf Leser; Leon Weber (BioNLP@ACL, 2022)

BigBio: A Framework for Data-Centric Biomedical Natural Language Processing. - Jason A. Fries; Leon Weber; Natasha Seelam; Gabriel Altay; Debajyoti Datta; Samuele Garda; Sunny Kang; Rosaline Su; Wojciech Kusa; Samuel Cahyawijaya; Fabio Barth; Simon Ott; et al. (NeurIPS, 2022)

The BigScience ROOTS Corpus: A 1.6TB Composite Multilingual Dataset. - Hugo Laurençon; Lucile Saulnier; Thomas Wang; Christopher Akiki; Albert Villanova del Moral; Teven Le Scao; Leandro von Werra; Chenghao Mou; Eduardo González Ponferrada; Huu Nguyen; Jörg Frohberg; Mario Sasko; et al. (NeurIPS, 2022)

Chemical-protein relation extraction with ensembles of carefully tuned pretrained language models. - Leon Weber; Mario Sänger; Samuele Garda; Fabio Barth; Christoph Alt; Ulf Leser (Database J. Biol. Databases Curation, 2022)

BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing. - Jason Alan Fries; Leon Weber; Natasha Seelam; Gabriel Altay; Debajyoti Datta; Samuele Garda; Myungsun Kang; Ruisi Su; Wojciech Kusa; Samuel Cahyawijaya; Fabio Barth; Simon Ott; et al. (CoRR, 2022)

ActiveAED: A Human in the Loop Improves Annotation Error Detection. - Leon Weber; Barbara Plank (ACL (Findings), 2023)

Establishing Trustworthiness: Rethinking Tasks and Model Evaluation. - Robert Litschko; Max Müller-Eberstein; Rob van der Goot; Leon Weber-Genzel; Barbara Plank (EMNLP, 2023)

Comparing Humans and Algorithms in Feature Ranking: A Case-Study in the Medical Domain. - Fabio Barth; Leon Weber-Genzel; Ulf Leser (LWDA, 2023)

Donkii: Can Annotation Error Detection Methods Find Errors in Instruction-Tuning Datasets? - Leon Weber-Genzel; Robert Litschko; Ekaterina Artemova; Barbara Plank (CoRR, 2023)

Text Mining for Pathway Curation - Leon Weber-Genzel (2023)

BELB: a biomedical entity linking benchmark. - Samuele Garda; Leon Weber-Genzel; Robert Martin; Ulf Leser (Bioinform., 2023)

PEDL+: protein-centered relation extraction from PubMed at your fingertip. - Leon Weber; Fabio Barth; Leonie Lorenz; Fabian Konrath; Kirsten Huska; Jana Wolf; Ulf Leser (Bioinform., 2023)

"My Answer is C": First-Token Probabilities Do Not Match Text Answers in Instruction-Tuned Language Models. - Xinpeng Wang 003; Bolei Ma; Chengzhi Hu; Leon Weber-Genzel; Paul Röttger; Frauke Kreuter; Dirk Hovy; Barbara Plank (ACL (Findings), 2024)

VariErr NLI: Separating Annotation Error from Human Label Variation. - Leon Weber-Genzel; Siyao Peng; Marie-Catherine de Marneffe; Barbara Plank (ACL (1), 2024)

Fine-grained Sexism Detection in Italian Newspapers. - Federica Maria Manzi; Leon Weber-Genzel; Barbara Plank (CLiC-it, 2024)

HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools. - Mario Sänger; Samuele Garda; Xing David Wang; Leon Weber-Genzel; Pia Droop; Benedikt Fuchs; Alan Akbik; Ulf Leser (CoRR, 2024)