Accelerating molecular modeling applications with graphics processors. - John E. Stone; James C. Phillips; Peter L. Freddolino; David J. Hardy; Leonardo G. Trabuco; Klaus Schulten (J. Comput. Chem., 2007)

Stereochemical errors and their implications to molecular dynamics simulations. - Eduard Schreiner; Leonardo G. Trabuco; Peter L. Freddolino; Klaus Schulten (BMC Bioinform., 2011)

PepSite: prediction of peptide-binding sites from protein surfaces. - Leonardo G. Trabuco; Stefano Lise; Evangelia Petsalaki; Robert B. Russell (Nucleic Acids Res., 2012)