Alignments anchored on genomic landmarks can aid in the identification of regulatory elements. - Kannan Tharakaraman; Leonardo Mariño-Ramírez; Sergey Sheetlin; David Landsman; John L. Spouge (ISMB (Supplement of Bioinformatics), 2005)

Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements. - Kannan Tharakaraman; Leonardo Mariño-Ramírez; Sergey Sheetlin; David Landsman; John L. Spouge (BMC Bioinform., 2006)

Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites. - Nak-Kyeong Kim; Kannan Tharakaraman; Leonardo Mariño-Ramírez; John L. Spouge (BMC Bioinform., 2008)

The Histone Database: an integrated resource for histones and histone fold-containing proteins. - Leonardo Mariño-Ramírez; Kevin M. Levine; Mario Morales; Suiyuan Zhang; Travis Moreland; Andreas D. Baxevanis; David Landsman (Database J. Biol. Databases Curation, 2011)

The ruzzo-tompa algorithm can find the maximal paths in weighted, directed graphs on a one-dimensional lattice. - John L. Spouge; Leonardo Mariño-Ramírez; Sergey Sheetlin (ICCABS, 2012)

Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps. - John L. Spouge; Leonardo Mariño-Ramírez; Sergey L. Sheetlin (Int. J. Bioinform. Res. Appl., 2014)

HistoneDB 2.0: a histone database with variants - an integrated resource to explore histones and their variants. - Eli J. Draizen; Alexey K. Shaytan; Leonardo Mariño-Ramírez; Paul B. Talbert; David Landsman; Anna R. Panchenko (Database J. Biol. Databases Curation, 2016)

Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules. - Natalia Acevedo-Luna; Leonardo Mariño-Ramírez; Armand Halbert; Ulla Hansen; David Landsman; John L. Spouge (BMC Bioinform., 2016)

Benchmarking computational tools for polymorphic transposable element detection. - Lavanya Rishishwar; Leonardo Mariño-Ramírez; I. King Jordan (Briefings Bioinform., 2017)

Workflow and web application for annotating NCBI BioProject transcriptome data. - Roberto Vera Alvarez; Newton Medeiros Vidal; Gina A. Garzón-Martínez; Luz S. Barrero; David Landsman; Leonardo Mariño-Ramírez (Database J. Biol. Databases Curation, 2017)

TPMCalculator: one-step software to quantify mRNA abundance of genomic features. - Roberto Vera Alvarez; Lorinc Sándor Pongor; Leonardo Mariño-Ramírez; David Landsman (Bioinform., 2019)

Comorbidities and Ethnic Health Disparities in the UK Biobank. - Whitney L. Teagle; Emily T. Norris; Lavanya Rishishwar; Shashwat Deepali Negar; I. King Jordan; Leonardo Mariño-Ramírez (AMIA, 2022)

The landscape of health disparities in the UK Biobank. - Shashwat Deepali Nagar; I. King Jordan; Leonardo Mariño-Ramírez (Database J. Biol. Databases Curation, 2023)

Landscape of racial and ethnic health disparities in the All of Us Research Program. - Vincent Lam; Shivam Sharma; John L. Spouge; I. King Jordan; Leonardo Mariño-Ramírez (Database J. Biol. Databases Curation, 2024)

Associations of perceived discrimination with health outcomes and health disparities in the All of Us cohort. - Vincent Lam; Sonali Gupta; I. King Jordan; Leonardo Mariño-Ramírez (J. Am. Medical Informatics Assoc., 2025)