A Performance and Energy Evaluation of OpenCL-accelerated Molecular Docking. - Leonardo Solis-Vasquez; Andreas Koch 001 (IWOCL, 2017)

DAPHNE - An automotive benchmark suite for parallel programming models on embedded heterogeneous platforms: work-in-progress. - Lukas Sommer; Florian Stock; Leonardo Solis-Vasquez; Andreas Koch 001 (EMSOFT Companion, 2019)

Comparison of affinity ranking using AutoDock-GPU and MM-GBSA scores for BACE-1 inhibitors in the D3R Grand Challenge 4. - Lea El-Khoury; Diogo Santos-Martins; Sukanya Sasmal; Jérôme Eberhardt; Giulia Bianco; Francesca Alessandra Ambrosio; Leonardo Solis-Vasquez; Andreas Koch 001; Stefano Forli; David L. Mobley (J. Comput. Aided Mol. Des., 2019)

D3R Grand Challenge 4: prospective pose prediction of BACE1 ligands with AutoDock-GPU. - Diogo Santos-Martins; Jérôme Eberhardt; Giulia Bianco; Leonardo Solis-Vasquez; Francesca Alessandra Ambrosio; Andreas Koch 001; Stefano Forli (J. Comput. Aided Mol. Des., 2019)

Accelerating Molecular Docking by Parallelized Heterogeneous Computing - A Case Study of Performance, Quality of Results, and Energy-Efficiency using CPUs, GPUs, and FPGAs. - Leonardo Solis-Vasquez (2019)

GPU-Accelerated Drug Discovery with Docking on the Summit Supercomputer: Porting, Optimization, and Application to COVID-19 Research. - Scott LeGrand; Aaron Scheinberg; Andreas F. Tillack; Mathialakan Thavappiragasam; Josh Vincent Vermaas; Rupesh Agarwal; Jeff Larkin; Duncan Poole; Diogo Santos-Martins; Leonardo Solis-Vasquez; Andreas Koch 001; Stefano Forli; et al. (BCB, 2020)

Evaluating the Energy Efficiency of OpenCL-accelerated AutoDock Molecular Docking. - Leonardo Solis-Vasquez; Diogo Santos-Martins; Andreas Koch 001; Stefano Forli (PDP, 2020)

Using Parallel Programming Models for Automotive Workloads on Heterogeneous Systems - a Case Study. - Lukas Sommer; Florian Stock; Leonardo Solis-Vasquez; Andreas Koch 001 (PDP, 2020)

Parallelizing Irregular Computations for Molecular Docking. - Leonardo Solis-Vasquez; Diogo Santos-Martins; Andreas F. Tillack; Andreas Koch 001; Jérôme Eberhardt; Stefano Forli (IA3@SC, 2020)

A cost model for NDP-aware query optimization for KV-stores. - Christian Knödler; Tobias Vinçon; Arthur Bernhardt; Ilia Petrov 001; Leonardo Solis-Vasquez; Lukas Weber; Andreas Koch 001 (DaMoN, 2021)

A Framework for the Automatic Generation of FPGA-based Near-Data Processing Accelerators in Smart Storage Systems. - Lukas Weber; Lukas Sommer; Leonardo Solis-Vasquez; Tobias Vinçon; Christian Knödler; Arthur Bernhardt; Ilia Petrov 001; Andreas Koch 001 (IPDPS Workshops, 2021)

Mapping Irregular Computations for Molecular Docking to the SX-Aurora TSUBASA Vector Engine. - Leonardo Solis-Vasquez; Erich Focht; Andreas Koch 001 (IA3@SC, 2021)

Porting and Optimizing Molecular Docking onto the SX-Aurora TSUBASA Vector Computer. - Leonardo Solis-Vasquez; Erich Focht; Andreas Koch 001 (Supercomput. Front. Innov., 2021)

Result-Set Management for NDP Operations on Smart Storage. - Tobias Vinçon; Christian Knödler; Arthur Bernhardt; Leonardo Solis-Vasquez; Lukas Weber; Andreas Koch 001; Ilia Petrov 001 (DaMoN, 2022)

On the necessity of explicit cross-layer data formats in near-data processing systems. - Lukas Weber; Tobias Vinçon; Christian Knödler; Leonardo Solis-Vasquez; Arthur Bernhardt; Ilia Petrov 001; Andreas Koch 001 (Distributed Parallel Databases, 2022)

Benchmarking the performance of irregular computations in AutoDock-GPU molecular docking. - Leonardo Solis-Vasquez; Andreas F. Tillack; Diogo Santos-Martins; Andreas Koch 001; Scott LeGrand; Stefano Forli (Parallel Comput., 2022)

Near-Data Processing in Database Systems on Native Computational Storage under HTAP Workloads. - Tobias Vinçon; Christian Knödler; Leonardo Solis-Vasquez; Arthur Bernhardt; Sajjad Tamimi; Lukas Weber; Florian Stock; Andreas Koch 001; Ilia Petrov 001 (Proc. VLDB Endow., 2022)

Experiences Migrating CUDA to SYCL: A Molecular Docking Case Study. - Leonardo Solis-Vasquez; Edward Mascarenhas; Andreas Koch 001 (IWOCL, 2023)

Altis-SYCL: Migrating Altis Benchmarking Suite from CUDA to SYCL for GPUs and FPGAs. - Christoph Weckert; Leonardo Solis-Vasquez; Julian Oppermann; Andreas Koch 001; Oliver Sinnen (SC Workshops, 2023)

Graphtoy: Fast Software Simulation of Applications for AMD's AI Engines. - Jonathan Strobl; Leonardo Solis-Vasquez; Yannick Lavan; Andreas Koch 001 (ARC, 2024)