THEMATICS is Effective for Active Site Prediction in Comparative Model Structures. - Ihsan A. Shehadi; Alper Uzun; Leonel F. Murga; Valentin A. Ilyin; Mary Jo Ondrechen (APBC, 2004)

Prediction of active sites for protein structures from computed chemical properties. - Jaeju Ko; Leonel F. Murga; Ying Wei; Mary Jo Ondrechen (ISMB (Supplement of Bioinformatics), 2005)

Active Site Prediction for Comparative Model Structures with Thematics. - Ihsan A. Shehadi; Alexej Abyzov; Alper Uzun; Ying Wei; Leonel F. Murga; Valentin A. Ilyin; Mary Jo Ondrechen (J. Bioinform. Comput. Biol., 2005)

Selective prediction of interaction sites in protein structures with THEMATICS. - Ying Wei; Jaeju Ko; Leonel F. Murga; Mary Jo Ondrechen (BMC Bioinform., 2007)

Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties. - Wenxu Tong; Ying Wei; Leonel F. Murga; Mary Jo Ondrechen; Ronald J. Williams (PLoS Comput. Biol., 2009)